Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01644 ATGGCGAGGATTAAGGTTTACGAGCTGAGGCAGAAGACAAAAGCTGATCTCTTGAATCAGCTGAAGGACCTCAAGGCCGAGCTTGCCTTGCTTCGTGTTGCTAAGGTCACCGGAGGTGCCCCTAACAAGCTCTCCAAGATAAAGGTGGTGAGGTTGTCGATTGCCCAGGTTTTGACGGTGATTTCTCAGAAACAAAAGGCTGCGTTGAGGGATGCCTACAAGAAGAAAAAGTACTTGCCACTTGATCTCCGTCCCAAGAAGACCAGGGCTATTCGCAGGAGGCTCACTAAGCACCAGGCCTCTTTGAAGACAGAGAGGGAGAAGAAGAAAGAGACCTATTTCCCAATGAGGAAATATGCTATCAAGGTGTAA 372 0.4866 MARIKVYELRQKTKADLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALRDAYKKKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKETYFPMRKYAIKV 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01644 123 Gene3D - 1 77 IPR036049 GO:0003735|GO:0005840|GO:0006412
Spst10g01644 123 Gene3D - 78 123 - -
Spst10g01644 123 Hamap 50S ribosomal protein L29 [rpmC]. 4 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Spst10g01644 123 Coils Coil 7 34 - -
Spst10g01644 123 Pfam Ribosomal L29 protein 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Spst10g01644 123 FunFam 60S ribosomal protein L35 78 123 - -
Spst10g01644 123 PANTHER 60S RIBOSOMAL PROTEIN L35 1 123 IPR045059 GO:0000463|GO:0022625
Spst10g01644 123 FunFam 60S ribosomal protein L35 1 77 - -
Spst10g01644 123 SUPERFAMILY Ribosomal protein L29 (L29p) 4 65 IPR036049 GO:0003735|GO:0005840|GO:0006412
Spst10g01644 123 CDD Ribosomal_L29_HIP 8 64 - -
Spst10g01644 123 NCBIfam 50S ribosomal protein L29 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01644 Spst-Chr10 16941737 16943203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01644 1 123 Cytoplasmic Ribosomal Protein Gene Family AT3G09500 88.618 9.46e-73 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01644 K02918 - gmx:100801539 228.024