Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst10g01629 | ATGGTTCTGTCAAACAAGAAACTGAAGCTTAAGCTCAGAGCTGAATTGGCCCAACAGCAAAATCATACCAACGAAGTCCCTTCATCTTCGAACTCTCTCAAAACTCTTTTGGACGCTGCCACCCCCACACCCAGATTGTCCAAGCGAGATAAACGCCGAAAGCTTCGATCTTCCGAACACCCCCCACAAGAACCCAACAAGGAAACTGAAACTGAGGGTTCGGCCAATAAGAAAAACAAAAAGAGAAAGAGGAAGGTAGAGAACGATGACGTAGCAAATGGAGTCCCTGACAAAACACCAAAGAAGAAGAAGAAAAAGAAGCAGAAGAAGAACAAGAAGAAAAAATCCAAAACTAAGGAAGAAAATGGTTCTAATGGCGGAGGGGAAGTGACAGAGGCTACGGAGTTAACCAAAACCAATATGACTACCAGTCAAGACAGTGTTGATGTCCCTACAAAGGTTTATGTTGGAGGAATTCCTTATTATTCAACTGAGGATGATATTCGAAGTTATTTTGAAAGCTGTGGCACCATAACGGAAGTTGATTGCATGTATTTTCCTGAAACTGGCAAGTTTAGAGGGATTGCCATTATTGATTTTAAGACTGAAGCAGCAGCTAAACGAGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTATTTCTTAAAATCCAACCATACAAAGCAACGCGAGCCAATAAAGCATCTGATTTTGCTCCAGAAATTTTGGAGGGGTACAACAGAGTATATGTTGGGAATTTGTCATGGGATATAACAGAGGAAGAACTGAGGAAATTCTTTAATAATTGCAAGATAACTTCGCTACGATTCGGTATGGACAAGGAGACAGGTGAGTTTCGAGGTTATGCCCATGTGGATTTCAGTGATAGTCAGTCACTGAAAACAGCACTTACGTTGGACCAAAATGTTTTGTATGAGAGACCTGTCAGAATAAGTTGTGCAGTTCCTCTGAAGAAAAAACTAGGAACTCGTTCAAGCTCCACAATTAATGGAGCTGATGGTGGTAAATCAACTTCCTTAGGAAATGGCAATATGAATGGAGCTGATGGTGATAAATCAAGTTCCACAGTAAGTGGCAAGATGAAGAGGAGGACGTGCTATGAATGTGGTGAGAAAGGACATGGTTTTTCAGAATGCCCTAAGAAACAAGCAGGTGCTGCAACTACAACCTGA | 1194 | 0.4188 | MVLSNKKLKLKLRAELAQQQNHTNEVPSSSNSLKTLLDAATPTPRLSKRDKRRKLRSSEHPPQEPNKETETEGSANKKNKKRKRKVENDDVANGVPDKTPKKKKKKKQKKNKKKKSKTKEENGSNGGGEVTEATELTKTNMTTSQDSVDVPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCMYFPETGKFRGIAIIDFKTEAAAKRALALDGADMGGLFLKIQPYKATRANKASDFAPEILEGYNRVYVGNLSWDITEEELRKFFNNCKITSLRFGMDKETGEFRGYAHVDFSDSQSLKTALTLDQNVLYERPVRISCAVPLKKKLGTRSSSTINGADGGKSTSLGNGNMNGADGDKSSSTVSGKMKRRTCYECGEKGHGFSECPKKQAGAATTT | 397 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst10g01629 | 397 | MobiDBLite | consensus disorder prediction | 123 | 145 | - | - | |
Spst10g01629 | 397 | SUPERFAMILY | Retrovirus zinc finger-like domains | 365 | 392 | IPR036875 | GO:0003676|GO:0008270 | |
Spst10g01629 | 397 | Coils | Coil | 5 | 25 | - | - | |
Spst10g01629 | 397 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 152 | 229 | IPR000504 | GO:0003723 | |
Spst10g01629 | 397 | MobiDBLite | consensus disorder prediction | 56 | 98 | - | - | |
Spst10g01629 | 397 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 73 | 229 | - | - | |
Spst10g01629 | 397 | Gene3D | - | 93 | 241 | IPR012677 | - | |
Spst10g01629 | 397 | MobiDBLite | consensus disorder prediction | 99 | 116 | - | - | |
Spst10g01629 | 397 | MobiDBLite | consensus disorder prediction | 15 | 145 | - | - | |
Spst10g01629 | 397 | SUPERFAMILY | RNA-binding domain, RBD | 241 | 348 | IPR035979 | GO:0003676 | |
Spst10g01629 | 397 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 247 | 323 | IPR000504 | GO:0003723 | |
Spst10g01629 | 397 | Gene3D | - | 349 | 397 | - | - | |
Spst10g01629 | 397 | MobiDBLite | consensus disorder prediction | 16 | 38 | - | - | |
Spst10g01629 | 397 | ProSiteProfiles | Zinc finger CCHC-type profile. | 373 | 388 | IPR001878 | GO:0003676|GO:0008270 | |
Spst10g01629 | 397 | CDD | RRM1_PHIP1 | 154 | 225 | IPR034361 | - | |
Spst10g01629 | 397 | Coils | Coil | 102 | 122 | - | - | |
Spst10g01629 | 397 | Gene3D | - | 243 | 330 | IPR012677 | - | |
Spst10g01629 | 397 | SUPERFAMILY | RNA-binding domain, RBD | 146 | 229 | IPR035979 | GO:0003676 | |
Spst10g01629 | 397 | MobiDBLite | consensus disorder prediction | 331 | 365 | - | - | |
Spst10g01629 | 397 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 154 | 220 | IPR000504 | GO:0003723 | |
Spst10g01629 | 397 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 249 | 316 | IPR000504 | GO:0003723 | |
Spst10g01629 | 397 | SMART | rrm1_1 | 153 | 225 | IPR000504 | GO:0003723 | |
Spst10g01629 | 397 | SMART | rrm1_1 | 248 | 319 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst10g01629 | Spst-Chr10 | 16769980 | 16771652 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst10g01629 | 138 | 303 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 30.682 | 5.67e-07 | 49.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst10g01629 | - | - | gmx:100814693 | 556.984 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst10g01629 | 10 | 16769980 | 16771652 | Spst10g01629 | 10 | 16769980 | 16771652 | ECH |