Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01629 ATGGTTCTGTCAAACAAGAAACTGAAGCTTAAGCTCAGAGCTGAATTGGCCCAACAGCAAAATCATACCAACGAAGTCCCTTCATCTTCGAACTCTCTCAAAACTCTTTTGGACGCTGCCACCCCCACACCCAGATTGTCCAAGCGAGATAAACGCCGAAAGCTTCGATCTTCCGAACACCCCCCACAAGAACCCAACAAGGAAACTGAAACTGAGGGTTCGGCCAATAAGAAAAACAAAAAGAGAAAGAGGAAGGTAGAGAACGATGACGTAGCAAATGGAGTCCCTGACAAAACACCAAAGAAGAAGAAGAAAAAGAAGCAGAAGAAGAACAAGAAGAAAAAATCCAAAACTAAGGAAGAAAATGGTTCTAATGGCGGAGGGGAAGTGACAGAGGCTACGGAGTTAACCAAAACCAATATGACTACCAGTCAAGACAGTGTTGATGTCCCTACAAAGGTTTATGTTGGAGGAATTCCTTATTATTCAACTGAGGATGATATTCGAAGTTATTTTGAAAGCTGTGGCACCATAACGGAAGTTGATTGCATGTATTTTCCTGAAACTGGCAAGTTTAGAGGGATTGCCATTATTGATTTTAAGACTGAAGCAGCAGCTAAACGAGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTATTTCTTAAAATCCAACCATACAAAGCAACGCGAGCCAATAAAGCATCTGATTTTGCTCCAGAAATTTTGGAGGGGTACAACAGAGTATATGTTGGGAATTTGTCATGGGATATAACAGAGGAAGAACTGAGGAAATTCTTTAATAATTGCAAGATAACTTCGCTACGATTCGGTATGGACAAGGAGACAGGTGAGTTTCGAGGTTATGCCCATGTGGATTTCAGTGATAGTCAGTCACTGAAAACAGCACTTACGTTGGACCAAAATGTTTTGTATGAGAGACCTGTCAGAATAAGTTGTGCAGTTCCTCTGAAGAAAAAACTAGGAACTCGTTCAAGCTCCACAATTAATGGAGCTGATGGTGGTAAATCAACTTCCTTAGGAAATGGCAATATGAATGGAGCTGATGGTGATAAATCAAGTTCCACAGTAAGTGGCAAGATGAAGAGGAGGACGTGCTATGAATGTGGTGAGAAAGGACATGGTTTTTCAGAATGCCCTAAGAAACAAGCAGGTGCTGCAACTACAACCTGA 1194 0.4188 MVLSNKKLKLKLRAELAQQQNHTNEVPSSSNSLKTLLDAATPTPRLSKRDKRRKLRSSEHPPQEPNKETETEGSANKKNKKRKRKVENDDVANGVPDKTPKKKKKKKQKKNKKKKSKTKEENGSNGGGEVTEATELTKTNMTTSQDSVDVPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCMYFPETGKFRGIAIIDFKTEAAAKRALALDGADMGGLFLKIQPYKATRANKASDFAPEILEGYNRVYVGNLSWDITEEELRKFFNNCKITSLRFGMDKETGEFRGYAHVDFSDSQSLKTALTLDQNVLYERPVRISCAVPLKKKLGTRSSSTINGADGGKSTSLGNGNMNGADGDKSSSTVSGKMKRRTCYECGEKGHGFSECPKKQAGAATTT 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01629 397 MobiDBLite consensus disorder prediction 123 145 - -
Spst10g01629 397 SUPERFAMILY Retrovirus zinc finger-like domains 365 392 IPR036875 GO:0003676|GO:0008270
Spst10g01629 397 Coils Coil 5 25 - -
Spst10g01629 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 152 229 IPR000504 GO:0003723
Spst10g01629 397 MobiDBLite consensus disorder prediction 56 98 - -
Spst10g01629 397 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 73 229 - -
Spst10g01629 397 Gene3D - 93 241 IPR012677 -
Spst10g01629 397 MobiDBLite consensus disorder prediction 99 116 - -
Spst10g01629 397 MobiDBLite consensus disorder prediction 15 145 - -
Spst10g01629 397 SUPERFAMILY RNA-binding domain, RBD 241 348 IPR035979 GO:0003676
Spst10g01629 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 247 323 IPR000504 GO:0003723
Spst10g01629 397 Gene3D - 349 397 - -
Spst10g01629 397 MobiDBLite consensus disorder prediction 16 38 - -
Spst10g01629 397 ProSiteProfiles Zinc finger CCHC-type profile. 373 388 IPR001878 GO:0003676|GO:0008270
Spst10g01629 397 CDD RRM1_PHIP1 154 225 IPR034361 -
Spst10g01629 397 Coils Coil 102 122 - -
Spst10g01629 397 Gene3D - 243 330 IPR012677 -
Spst10g01629 397 SUPERFAMILY RNA-binding domain, RBD 146 229 IPR035979 GO:0003676
Spst10g01629 397 MobiDBLite consensus disorder prediction 331 365 - -
Spst10g01629 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 154 220 IPR000504 GO:0003723
Spst10g01629 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 249 316 IPR000504 GO:0003723
Spst10g01629 397 SMART rrm1_1 153 225 IPR000504 GO:0003723
Spst10g01629 397 SMART rrm1_1 248 319 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01629 Spst-Chr10 16769980 16771652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01629 138 303 Eukaryotic Initiation Factors Gene Family AT3G16380 30.682 5.67e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01629 - - gmx:100814693 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01629 10 16769980 16771652 Spst10g01629 10 16769980 16771652 ECH