Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01626 ATGATGAAGAGAGAAAGAGAAGTTGATAGCATAACCATGGGCAACTACTTGATGTTGCTTTCTGGAGGAGGTGAATTTGAGAGCACAAACTACTTGAAGCACTCTTCCAACGACCGTGTGTTTGAGTGCAAGACGTGTAAGAGGCAGTTCCCATCGTTTCAGGCATTGGGAGGGCACCGTGCGAGTCACAAGAAGCCAAGGTTGATGATGGGAGAGAGCGACCATAACCAAGTGCTTCATGGTTCACCACCAAAGCCTAAGACACACGAGTGTTCCATTTGTGGTTTGGAGTTTGCGATAGGGCAAGCTTTAGGAGGACATATGAGACGCCATAGAACATCATCATCATCATCAAATGGAAGCACGCACAATACTACTACTGCTACCACTAATTCTTCTTCTGTGAGTGGTAGCACTGTTGATGACACTTCACCAAACATGAGCCACAACACTAACAACAAGAGGGTTTTGTTTCCTGATTTGAACTTGACGCCATTAGAGAATGACTTGGTGTTTTTGAAGATCAGACAAGCAACTCCTTTAGTTCACTGCTTTAATTGA 561 0.4439 MMKREREVDSITMGNYLMLLSGGGEFESTNYLKHSSNDRVFECKTCKRQFPSFQALGGHRASHKKPRLMMGESDHNQVLHGSPPKPKTHECSICGLEFAIGQALGGHMRRHRTSSSSSNGSTHNTTTATTNSSSVSGSTVDDTSPNMSHNTNNKRVLFPDLNLTPLENDLVFLKIRQATPLVHCFN 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01626 186 PANTHER ZINC FINGER PROTEIN ZAT5 12 168 - -
Spst10g01626 186 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Spst10g01626 186 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Spst10g01626 186 SMART c2h2final6 89 111 IPR013087 -
Spst10g01626 186 SMART c2h2final6 41 63 IPR013087 -
Spst10g01626 186 MobiDBLite consensus disorder prediction 109 154 - -
Spst10g01626 186 SUPERFAMILY beta-beta-alpha zinc fingers 39 111 IPR036236 -
Spst10g01626 186 Gene3D Classic Zinc Finger 23 114 - -
Spst10g01626 186 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Spst10g01626 186 MobiDBLite consensus disorder prediction 105 154 - -
Spst10g01626 186 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Spst10g01626 186 Pfam C2H2-type zinc finger 40 66 - -
Spst10g01626 186 Pfam C2H2-type zinc finger 89 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01626 Spst-Chr10 16748613 16749173 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01626 13 175 C2H2 Transcription Factor Family AT2G28710 42.857 4.66e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst10g01626 zf-C2H2_6 1.5e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01626 - - gmx:100816598 212.231