Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01623 ATGGTGAACGTGGTGGAATTGCAGAAACACCTGCAGAGGTGGCAGCAGAGTGGGAATAACGTGAATGTCGATGCCAACGGAGAGCTCATGTATGTCAAAGTCATGACTGATGAGCAGTTGGAAACCCTCAGGAAACAAATTGCTGTTTATGGCACCATTTGTGACCAACTTATTGAGATGCACAGAACACTCTCAGCTCAACAGGATCTTGCAGGGGTTAGATTGGGAAACATATACTGTGATCCATTGATGACATCTGTCGGACACAAAATAACATCCAGACAAAGGTGGACACCTACACCTGTGCAGCTTCAGATTCTTGAACGTATATTTGATCAGGGAAATGGAACTCCAAGCAAGGAAAAAATCAAGGAGATCACTGCTGAACTGGGCCAGCATGGTCAAATTTCTGAAACAAATGTGTATAACTGGTTTCAGAATAGGCGTGCTCGATCCAAAAGAAAACTGCAAAATGTGGCTGCTAGCAACACTGAATCAGAATTGGACACTGAGGTTGATTCTAAGGATAAGAAGACAAAACCTGCGGAGTTTCTGTCCCAGCATAACATAACTTCTGGAGGGGCTGAAAAGTTGTGCTTTCAGAACCCTCACGTGTACTCTGACTTGCAGTACTTGAACCCTGATTCCAGCAAACCGTACTCCATGTTCCCATCAGATGGCAGTTTGAAATCCACAAGAAATTTAAGTCATGTGTCTGTTTTTAATGAGGTGCTGTCTAACTCAAGGAGTGAGTATGGAGGTGGTGGAAAAATGGAAGTTGCTGGGACAGTGAGCTACAATTTATTTCACCAAACAGGAAATCTTGGGGCTTGA 834 0.4376 MVNVVELQKHLQRWQQSGNNVNVDANGELMYVKVMTDEQLETLRKQIAVYGTICDQLIEMHRTLSAQQDLAGVRLGNIYCDPLMTSVGHKITSRQRWTPTPVQLQILERIFDQGNGTPSKEKIKEITAELGQHGQISETNVYNWFQNRRARSKRKLQNVAASNTESELDTEVDSKDKKTKPAEFLSQHNITSGGAEKLCFQNPHVYSDLQYLNPDSSKPYSMFPSDGSLKSTRNLSHVSVFNEVLSNSRSEYGGGGKMEVAGTVSYNLFHQTGNLGA 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01623 277 Pfam Homeodomain 94 154 IPR001356 GO:0003677
Spst10g01623 277 Gene3D - 96 161 - -
Spst10g01623 277 SMART HOX_1 92 159 IPR001356 GO:0003677
Spst10g01623 277 ProSiteProfiles 'Homeobox' domain profile. 90 155 IPR001356 GO:0003677
Spst10g01623 277 SUPERFAMILY Homeodomain-like 92 157 IPR009057 -
Spst10g01623 277 CDD homeodomain 94 155 IPR001356 GO:0003677
Spst10g01623 277 PANTHER WUSCHEL-RELATED HOMEOBOX 13 16 266 IPR044559 GO:0003700
Spst10g01623 277 MobiDBLite consensus disorder prediction 156 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01623 Spst-Chr10 16727880 16730137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01623 30 276 Wox Gene Family AT4G35550 51.880 2.79e-80 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Spst10g01623 Homeodomain 7.9e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01623 - - pvu:PHAVU_007G011600g 484.182