Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01606 ATGTGTTGTTGTTTTGCATTTGAGCCTGGGATGGTGGCTGTGCATGGCAAGAGAAGGTTGAGGAGTTTGTTTTGGAGGGTGAGAGCATATATGAAGAGGCAGATGAAGAAGAAGACTTGCTCCCCTAAGAACAACTTTCACTACGACCCTCTTAGTTACTCTCTCAACTTTGACGATGGCAATTTTCTCTTCTTTTGCCCGACACAACTAATCATCTCACACCATAACCACACCACTCAGAAAATGGCATCCCAGACGAGGAAGAGAGTTGACGCCGTTGATTCTCGCTCTTCTACCGTTCTCGTTCGCGCTAAGGATGGCAGTGCTTTTGCACGATGCGACGATTGCAAGAAGAATGTGCCGGTCGCACTCATCGACATGCACAGTTGCAGCCTTGAGGCAAAAATTAAAATGAACCTAGATGCTCAGGTTGTGGAACAGGCTGCCGAATCTAAGAAGCCAGAGAGGAAGAAACCCAAGTCCAAAGAGCCAAAGGCGAAAAAGTCTAAGGTGGAGAAGGGGAAGAAGGTCAAGGATCCTAACATGCCTAAGCGTCCTGCCACGGCCTTCTTTATCTTCTTGGATGATTTTCGAAAAACGTTCAAGGAAGCTAATCCTGATTCAAAGGATGTTAAAAGGGTTGGCAAGGAGGCTGGTGAGAAATGGAAGTCTATGACTGATGAAGAGAAGAAGCCTTATTTGGATAAAGTTGCTGAACTCAAGGCAGAGTATGAAAAGGCTATGGAAAGCTATAGAGCTGGTGAAGTTGAAGAAGATGAAGCTGGATCTGATAAGGAAACTGCTGCAAAAGAAGTGGAAGAGGAGTTAACGGATGAAGACTAA 843 0.4543 MCCCFAFEPGMVAVHGKRRLRSLFWRVRAYMKRQMKKKTCSPKNNFHYDPLSYSLNFDDGNFLFFCPTQLIISHHNHTTQKMASQTRKRVDAVDSRSSTVLVRAKDGSAFARCDDCKKNVPVALIDMHSCSLEAKIKMNLDAQVVEQAAESKKPERKKPKSKEPKAKKSKVEKGKKVKDPNMPKRPATAFFIFLDDFRKTFKEANPDSKDVKRVGKEAGEKWKSMTDEEKKPYLDKVAELKAEYEKAMESYRAGEVEEDEAGSDKETAAKEVEEELTDED 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01606 280 MobiDBLite consensus disorder prediction 251 280 - -
Spst10g01606 280 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 183 252 IPR009071 -
Spst10g01606 280 Pfam HMG (high mobility group) box 183 252 IPR009071 -
Spst10g01606 280 SUPERFAMILY HMG-box 174 256 IPR036910 -
Spst10g01606 280 CDD HMG-box_AtHMGB1-like 184 244 - -
Spst10g01606 280 SMART hmgende2 182 253 IPR009071 -
Spst10g01606 280 Gene3D High mobility group box domain 178 254 IPR036910 -
Spst10g01606 280 FunFam high mobility group B protein 7 isoform X1 178 254 - -
Spst10g01606 280 MobiDBLite consensus disorder prediction 165 182 - -
Spst10g01606 280 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 85 274 - -
Spst10g01606 280 MobiDBLite consensus disorder prediction 251 272 - -
Spst10g01606 280 MobiDBLite consensus disorder prediction 147 183 - -
Spst10g01606 280 Coils Coil 237 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01606 Spst-Chr10 16639513 16642487 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Spst10g01606 HMG_box 9.5e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01606 K25507 - gmx:100810345 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01606 10 16639513 16642487 Spst10g01606 10 16639513 16642487 ECH