Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01605 ATGGATGAGATGAAGAGCAGTTCGTCAGATGATGACTTGGAGGAGATAGTTGATCCTAGGAGTACTCTTCCACATTGGGCTACAACCACTGAAAGGAGTTCAGATTATGGTAGGCAGGATAATTCTTCAAGAGGGGCAAATAGTTCAAACCTAAGTTCTTCTAATATTTATAATCATTCACAAATCAAGCCTCATACACTACCTGTGTCCAGCACCAATGCACTGAACCACAGAATTGCACGAAGAGATGAGCCTTCCTACCATGCCCAGAATGGAAACACAAGTCAGCAACAAGCAGTTAATTCCCGAATTTCAAATTCTCATGGTGCAGATTATGAGAAAATGTCATCTCAGCAAGCTTTCAGGAGGACCCTTCCTTCATCTCTTCAGCCTTCTGCAACAAGGGCTCTTCATTCTTCTTCATTTGCATCAGACAGCAGATTAAGCAACTTAAAAGATAATGCAAGTAGTAGTCAACTTCATGATGCATATAAAAATCGTCGCCAGGGAGTAGGGCCTAGCACATCCAGTGACAGGGGCTACATTCGTGACAATTTTAGCAGGGGCTATGATGAAGATCGTTACCTGTATCAAAATGGTGGGAACAGGATTCTTCCATCATCTTTGGCACCTGGAAAGGCCATAGTTCCACACTTTGCTATTTCTAGTGAATCTGCATATCGTTCTGGAGCAGGTGATGAAAGATCTGCTGAAAACGATGAGAGACTAATTTATGAGGCAGCATTACAGGATATCAGTCAACCTAAAACAGAATATGACTTACCTGCTGGTGTATTGTCTGTCTCTCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAAGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGTCTTGGAAAGACAATCTCAATGATTTCCCTCATTCTGGCATTGAGGTCATTACAGTCAAAATCAAAAACAGATGATACATGCAATCACAAAACTGAAGCTTTGAATTTGGATGATGATGAAGATAATGGTGGTGTAGATGTGGAAAAGCATAAAAATGTTGAGGTATCCGATGATTTGAAACCTAATACAGAACCTATCAGTTCAACGCAGGCACCTGGCAGGAAAAGACCGGCTGCTGGTACACTAGTTGTCTGCCCTGCTAGTGTTCTTCGACAGTGGGCCAGGGAACTTGATGAAAAAGTTGGAGGTGAAAAGCTTTCTGTTTTAGTGTATCATGGGGGCAGTAGGACAAAGGATCATGTAGAACTTGCAAAATTTGATGTGGTTCTAACAACATACTCTATTGTGACTAATGAAGTTCCTAAGCAACCAATAGTAGAGGAGGATGATATTGAAGACAAAAATGGCGAAAGATTTGGGTTATCCTCTGAGTTTTCTGTTAGTAAAAAGAGGAAAAAACCATTTAATGGAAATAGGAAGAGTAAAAAAGGTAGAAAAGGAATTGACAGTTCTATCGAATGTGGTTCCGGTCCCCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAGGCTCAAACAATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTAGAGCCAAAAGAAGGTGGTGCTTATCTGGAACACCTATTCAAAATTCTATTGATGATTTGTATAGCTACTTTAGATTCCTAAAGTATGATCCTTACGCAGTATATAAGTCATTTTACAACACCATAAAGGTTCCAATATCCCGAAATTCAATTCAAGGTTACAAGAAACTACAAGCAGTTTTAAGGGCCATAATGCTACGTCGTACAAAAGGAACTTTGCTTGATGGAAAGCCAATAATCAATTTGCCTCCTAAAACAATTGAGCTCAGTAAAGTGGATTTCTCCATTGAGGAGCGGGCCTTCTACACCAAGTTGGAAACAGACTCACGCACTCAATTTAGGAACTTTAGCACAAAAAGAGAGCCCAACCCAAAAGAATGGCTCATTAGGTGGGAGAGTCTCAAAGCTTACGCATATGCTGCTGCTGGCACAGTGAACCAAAACTATGCTAATATTCTTTTAATGCTCTTACGTCTCCGTCAGGCTTGTGACCACCCCCTTCTAGTTAAAGATATTGATTCAGACCCTGTTGGGAAGGATTCTGTTGAAATGGCAAAAAATCTTCCAAGGGACATGCTGATTAATCTGTTTAATTGTTTGGAAGAAACTTTTGCTATCTGTAATGTTTGCAATGATCCCCCTGATGACCCTGTTATTACGATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCAGAATATTTGACTGGTGATGATAATACGTGCCCTGCAGTTAATTGTAAAGAACTAATTGGTGATGATCTTGTTTTCTCGAAAGTTACTTTGAGGAGTTGCATCTCTGATGATGGTGGCAGTTCTAGTTCTGCAAATTCACATCTTTGTGATTTTTCGCTAGTGCAGCAGAGTGACTACGTTTCATCTAAAATCAAAGCTGTTCTTGAGGTTTTGCAGTTAAATTGTAACGTGAAGATATCTAGTTCTGACTTACCAAACTCCTCTGAATGTTGTAGAGATTCACCATCTTCTGATAATTTATATGAAGACTGTGATTCAGATATTAGGGCTACAAAACACACAAGAAAGTATTCAGAGTCCACAACTGAAGCACCGATAAAAGCTATAGTTTTTTCCCAGTGGACTAGCATGTTGGACCTAGTTGAGACATCATTGAGTCAATTTAGTATACCGTATAGGAGACTTGATGGTAGAATGACTCTGAGTGCAAGGGACAAAGCTGTTAAGGATTTCAATACTGAACCTGAGATAGCTGTTATGCTGATGTCACTAAAAGCAGGAAACCTTGGTTTGAATATGGTTGCTGCTTGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACAACTGAAGATCAAGCAATTGATCGAGCCCATAGAATTGGACAAACTCGTCCTGTTACTGTGACACGGATTACTATAAAAGATACAGTTGAAGATCGGATACTGGCTCTTCAGGATGAAAAGAGAAAAATGGTTGCATCCGCTTTTGGGGAAGACCATGCTGGTGGGTCTGGAACTCGCCTAACTGTGGATGATCTGAAATATCTCTTCATGGTCTAG 3129 0.4036 MDEMKSSSSDDDLEEIVDPRSTLPHWATTTERSSDYGRQDNSSRGANSSNLSSSNIYNHSQIKPHTLPVSSTNALNHRIARRDEPSYHAQNGNTSQQQAVNSRISNSHGADYEKMSSQQAFRRTLPSSLQPSATRALHSSSFASDSRLSNLKDNASSSQLHDAYKNRRQGVGPSTSSDRGYIRDNFSRGYDEDRYLYQNGGNRILPSSLAPGKAIVPHFAISSESAYRSGAGDERSAENDERLIYEAALQDISQPKTEYDLPAGVLSVSLLRHQKIALAWMLQKETKSLHCLGGILADDQGLGKTISMISLILALRSLQSKSKTDDTCNHKTEALNLDDDEDNGGVDVEKHKNVEVSDDLKPNTEPISSTQAPGRKRPAAGTLVVCPASVLRQWARELDEKVGGEKLSVLVYHGGSRTKDHVELAKFDVVLTTYSIVTNEVPKQPIVEEDDIEDKNGERFGLSSEFSVSKKRKKPFNGNRKSKKGRKGIDSSIECGSGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSIQGYKKLQAVLRAIMLRRTKGTLLDGKPIINLPPKTIELSKVDFSIEERAFYTKLETDSRTQFRNFSTKREPNPKEWLIRWESLKAYAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDIDSDPVGKDSVEMAKNLPRDMLINLFNCLEETFAICNVCNDPPDDPVITMCGHVFCYQCVSEYLTGDDNTCPAVNCKELIGDDLVFSKVTLRSCISDDGGSSSSANSHLCDFSLVQQSDYVSSKIKAVLEVLQLNCNVKISSSDLPNSSECCRDSPSSDNLYEDCDSDIRATKHTRKYSESTTEAPIKAIVFSQWTSMLDLVETSLSQFSIPYRRLDGRMTLSARDKAVKDFNTEPEIAVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQDEKRKMVASAFGEDHAGGSGTRLTVDDLKYLFMV 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01605 1042 CDD SF2_C_SNF 885 993 - -
Spst10g01605 1042 MobiDBLite consensus disorder prediction 23 70 - -
Spst10g01605 1042 Pfam Helicase conserved C-terminal domain 885 984 IPR001650 -
Spst10g01605 1042 Gene3D - 242 333 IPR038718 -
Spst10g01605 1042 MobiDBLite consensus disorder prediction 356 378 - -
Spst10g01605 1042 MobiDBLite consensus disorder prediction 86 184 - -
Spst10g01605 1042 SMART ring_2 737 775 IPR001841 -
Spst10g01605 1042 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 730 786 IPR013083 -
Spst10g01605 1042 MobiDBLite consensus disorder prediction 1 19 - -
Spst10g01605 1042 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 479 610 - -
Spst10g01605 1042 MobiDBLite consensus disorder prediction 87 182 - -
Spst10g01605 1042 Gene3D - 481 611 IPR038718 -
Spst10g01605 1042 Pfam SNF2-related domain 273 698 IPR000330 GO:0005524|GO:0140658
Spst10g01605 1042 SMART helicmild6 901 984 IPR001650 -
Spst10g01605 1042 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 285 560 IPR014001 -
Spst10g01605 1042 Gene3D - 613 1041 IPR027417 -
Spst10g01605 1042 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 607 1041 IPR027417 -
Spst10g01605 1042 Gene3D - 365 452 IPR038718 -
Spst10g01605 1042 MobiDBLite consensus disorder prediction 471 490 - -
Spst10g01605 1042 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 255 598 IPR027417 -
Spst10g01605 1042 Pfam Zinc finger, C3HC4 type (RING finger) 737 773 IPR018957 GO:0046872
Spst10g01605 1042 CDD DEXDc_SHPRH-like 270 598 - -
Spst10g01605 1042 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 47 1041 - -
Spst10g01605 1042 SMART ultradead3 266 577 IPR014001 -
Spst10g01605 1042 MobiDBLite consensus disorder prediction 1 70 - -
Spst10g01605 1042 ProSitePatterns Zinc finger RING-type signature. 752 761 IPR017907 -
Spst10g01605 1042 SUPERFAMILY RING/U-box 734 787 - -
Spst10g01605 1042 ProSiteProfiles Zinc finger RING-type profile. 737 776 IPR001841 -
Spst10g01605 1042 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 858 1037 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01605 Spst-Chr10 16622799 16634876 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01605 1 942 RAD5 or RAD16-like Gene Family AT1G50410 53.057 0.0 886
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst10g01605 SNF2_N 6e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01605 - - gmx:100795142 1765.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01605 10 16622799 16634876 Spst10g01605 10 16622799 16634876 ECH