Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01591 ATGTCGGAAGCACCACCGTCTCAGCCACCGCCTCCAACAGCCGACGCCACATCGCCGCCGTACTGGTGCTACCACTGCGAGAAGCGCGTTACAGTCGAAACGCTCGCCAATCTCCCAGACGTCGTCTGCGGCGAGTGCAAAAACGGCTTCGTCGAATCCATCCCCACGCCGTCGCGCTCGCGCTCCCCATCCGCCTCATCCGATGACCCCTACTTTGGCTCGCAGTTCCTCCAGGTGCTTCGCCTAATCGCGCAGTCGGCGCGTGACGAAGACGCGTCGCCTCCGCCGCCACCGAACCGCTCCCCGGAGAACGATTTCCTTAGAATCGAGCTCGGCGGCTGGGACAACGACGAAGAAAACGAAAACGAGAACGACGACGATAACGGCGACGAGGAGTTCGAGGAGCACGAGGAGGCGGAGGATCGCTCCGGCAACGAGGATCCGCACGGAGACGACGAGGATCTGAGAAGGAGGAGGCGCGAGCTGCTTCGGCTTCGGATTAGGGATTTGGCGACGCGCACGAGGAGCATGCGGAACCGGATCTTGGATTGGGCGGAGATTCTGATGGGCCTGGAGGACAATTCCATTGAGTTCCGCCTCCGGGTGCCGGAATCCGACCGCTACGTCGGGAATCCGGAGGATTACGTCGACGCGGTGGAGTACGAGGCGCTACTGCAGACGCTGGCAGAGACCGACGGCGGGGGCAGGAGAGGAGCGCCACCGGCTTCGAAGTCCGCTGTGGAAGCCTTGCCGACAGTGAAAATTGCGTCGGAGAGCGAAACTGTGGTGTGCGCTATTTGTAAGGATTTGCTCGGCGTAGGAGACCCCGCGAAGAGGTTACCGTGCGGGCATCATTATCATGGGGATTGCATTGTTCCTTGGTTGAGCTCCAGAAATTCTTGCCCTGTTTGTAGGTTTGAGCTTCCAACGGATGATAAGGAATATGAGGAAGAGAGAGTGGTTAACGCTGCCTCTTCGAATTCGAACGGAGCTTCCAGTTCCGGTGGAGGTGGAAGGGCCATTGTTTGA 1029 0.5977 MSEAPPSQPPPPTADATSPPYWCYHCEKRVTVETLANLPDVVCGECKNGFVESIPTPSRSRSPSASSDDPYFGSQFLQVLRLIAQSARDEDASPPPPPNRSPENDFLRIELGGWDNDEENENENDDDNGDEEFEEHEEAEDRSGNEDPHGDDEDLRRRRRELLRLRIRDLATRTRSMRNRILDWAEILMGLEDNSIEFRLRVPESDRYVGNPEDYVDAVEYEALLQTLAETDGGGRRGAPPASKSAVEALPTVKIASESETVVCAICKDLLGVGDPAKRLPCGHHYHGDCIVPWLSSRNSCPVCRFELPTDDKEYEEERVVNAASSNSNGASSSGGGGRAIV 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01591 342 MobiDBLite consensus disorder prediction 323 342 - -
Spst10g01591 342 MobiDBLite consensus disorder prediction 116 141 - -
Spst10g01591 342 ProSiteProfiles Zinc finger RING-type profile. 264 305 IPR001841 -
Spst10g01591 342 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 124 309 - -
Spst10g01591 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 311 IPR013083 -
Spst10g01591 342 SMART ring_2 264 304 IPR001841 -
Spst10g01591 342 Pfam zinc-ribbon 21 54 IPR039525 GO:0061630
Spst10g01591 342 MobiDBLite consensus disorder prediction 48 73 - -
Spst10g01591 342 FunFam E3 ubiquitin-protein ligase RING1-like 227 311 - -
Spst10g01591 342 Pfam Ring finger domain 264 305 IPR001841 -
Spst10g01591 342 MobiDBLite consensus disorder prediction 53 73 - -
Spst10g01591 342 MobiDBLite consensus disorder prediction 87 106 - -
Spst10g01591 342 SUPERFAMILY RING/U-box 259 311 - -
Spst10g01591 342 MobiDBLite consensus disorder prediction 114 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01591 Spst-Chr10 16547652 16548680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01591 175 317 C3H Transcription Factor Family AT5G01980 50.000 2.76e-36 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01591 - - gmx:100780991 519.62