Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01577 ATGATGTCTTCCGACGGCGGCGGATTGAAGCCGTTTTTCTGTCACGTGTGCGACGAGAGGATCACGTGCACCGATGAGTCGGAACCTTTCTGCCCGATCTGTCTTCAAGGATTCGTGGAAGAATGGAACCCTGATAATCCAAACCCTAACCCTAATTTTATCCATGAGAGTGAGGTGGAATCTTGGGATCCCGAATTCCCGTTCAACTCCCTCTCCTTGCTACCTTTCATGATCAACACCGTTTCCAGGGTCCGACCCGAAACCGATATGTTCGACCCGATGACCTTCCTCCAGAACCACCTTCAGGGCCTTCGCGCCGACGGCGCCAACATCCAATTTTCCTTCGGCAATCCTTCGGACACGGGATTCCGCCTCTCGCCCAACATGGGTGACTACTACCTCGGCCCCGGTCTTGAGCAGCTGATTCAGCAGCTCGCTGACAATGACCCCAACCGTTACGGTACGCCACCCGCCGCCAAGGACGCCGTCGAGAATCTCCCCACAGTCACCGTTGACGACGAGTTGCTGAACTCGGAGCTGAACCAGTGCGCGGTCTGCCAGGACGAGTTCGAGAAGGGCACGCAGGTGACGCAGATGCCGTGCAAGCACGCGTACCACGCTGATTGCTTGATTCCTTGGCTTCGGCTGCATAACTCTTGCCCCGTTTGTCGGTATGAACTGCCCACGGATGACGCGGATTACGAGAATCGGACGCGGGGCAGTGGCGATGATGGTGGGTCGAGGTCTGATGGGAACGACGGGGGCGGTGGCACTGGAGGGGGAGGGGGTAATAATAGACCTATTCACAGAACTTTTAGAATATTTTTGCGGCCTCCTTTTGATGCAGGTGGTTCTGAGCAGGACAGTGCTGAAAGGGGATGGGAAAGTTGGGATTGA 897 0.5596 MMSSDGGGLKPFFCHVCDERITCTDESEPFCPICLQGFVEEWNPDNPNPNPNFIHESEVESWDPEFPFNSLSLLPFMINTVSRVRPETDMFDPMTFLQNHLQGLRADGANIQFSFGNPSDTGFRLSPNMGDYYLGPGLEQLIQQLADNDPNRYGTPPAAKDAVENLPTVTVDDELLNSELNQCAVCQDEFEKGTQVTQMPCKHAYHADCLIPWLRLHNSCPVCRYELPTDDADYENRTRGSGDDGGSRSDGNDGGGGTGGGGGNNRPIHRTFRIFLRPPFDAGGSEQDSAERGWESWD 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01577 298 Pfam Ring finger domain 181 224 IPR001841 -
Spst10g01577 298 FunFam E3 ubiquitin-protein ligase RING1-like 144 230 - -
Spst10g01577 298 MobiDBLite consensus disorder prediction 232 246 - -
Spst10g01577 298 SUPERFAMILY RING/U-box 162 230 - -
Spst10g01577 298 SMART ring_2 183 223 IPR001841 -
Spst10g01577 298 ProSiteProfiles Zinc finger RING-type profile. 183 224 IPR001841 -
Spst10g01577 298 MobiDBLite consensus disorder prediction 232 298 - -
Spst10g01577 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 230 IPR013083 -
Spst10g01577 298 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 88 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01577 Spst-Chr10 16468739 16469635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01577 126 239 C3H Transcription Factor Family AT5G01980 48.246 1.27e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01577 K11982 - gmx:100785289 417.927