Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01570 ATGACGCGCGGAAAGAAGAAGCAACAAGGGAATACAGTTACCATTCCAGTGGATTCAAACCCCACTCAGCAAAATACCCAATCCTTGGATTTTGATGCTGGGTGTGAGGCTGTTGAGATTAAAGCAATGGACTTCACTGAAAACAATCATGATGGGGCAGGAGGGTATTCTTCTGTTGCAGAAGGCGTGAAAAGGAAGCGTGGCAGAAAAAGTAAAGAGGAGGAGGGCATGAAAACAATGCTAGAGGGCAATTTGTTGGAGAAGAACGATGTTCAGGACGAAAACCACGGTGGAAATGGTGGGGTTGGAGATTGTTCTTTTGTTCAAGGTGTGAAAAAGAAGCGTGGCAGAAAGAGTAAAAAAGATAAGGATGACATGAAAATGAAGAAGTCAGAGGGTAATTTGTTGGAGAAAGAGGGTGTTCAAGACGTTAAACACGGTGAAAATGGTGGCGTTGGAGGGTCTTCTTCTGTTCAGGAAGGTGTGAGAAAGAAACCCGGCAGAAACAGTAATAAAGACAAGCAGGACATGAAAGGGAAGGAGATACTAGAGAGCAAATTATTGGAGAAGAAAGATGTTCTAGACGATAATCATGGCAAAATTAGTGGGGTTGCTGAGAAGAGACGTGGGAGAAAAAGAAAGACGCTTGAGGAAGATGGTGACGTCTTTGGAATGCCTGCGGATTCTTCAGGAAGTGGCATCCAGAAGCAATATAATTTTAGGAGCCCTAAAGTCAATATAGAAGTGGTGATGCCAAAAATCAACCAAAAAGATATTAAGTTGAATGAAGAACAGTCCTCGATGTGTCATCAATGCCAGAGAAATGATAAAGGCAAGGTTGTGAGATCTATGAGGTTTTTCTCTGTGTTTACCACTGCATTGCCAGTTATCTATCTGGTGTTACGGTATCCTCATTTGACAGAGCATTATATTGCTGAGGCATGTCCTGTGTGCCGTGGTAATTGCAACTGCAAAGCATGCTTGAGATCCGATGTACTTATTAAAGAAATGAAGGGGATAGAAACCAATGAAGATAAGAAGGTTGAACTTTCTATGCGTTTGCTGCAATTACTTCTTCCGTATTTAATGTTGTTGGATGAAGAACAGATGATTGAGAAAGAGACAGAAGCTAAGATACAAGTTATTCCTGCATCTTTAGTTGTTAACTTAACACTCTCTTGTAGTGACAACTGCAAAACGTCAATATTTGATTACCACAGAAGCTGTACAGAATGCTCTTTTGATCTGTGTCTCATCTGTTGCCGTGAGCTTCGTAGTGGGCAGCTTGTAGGTGGTGCAGATCCAATTATGTTGGAGTTTGTCTGGCGAGGTCGTGGTTACTTGCATGGTGAACAAGAAAATAAAATGGAAAAACAAATTGAAGCAAATGATGTTTTTAAGCCTGTAGTTCGTGAATGGTCAAGATCTGGGTGGCATGCAGAATGTAATGGTAGCATTCCTTGTCCAAAAGTTAATGATGAATGTAACCATGGTTTTCTTGAACTGAGAAGTGTGTTTGGTCAACATTTTATCACTGATTTAGTGTGTAAAGCAAATGAACTAGCACAAACATTCAAGCTTGAGACCCCTGGCAACTTCTGTTCATGTTTGAGGCTTGATGGAAACACAGATGTTAGATTTAATAATATGATGAAGGCGGCTTCCCGTTCAGATTCCAGTGACAACTACTTGTACTATCCTAGGGCTGTACAACTACAGGATGAGGATTTAAGGCATTTTCAGTGGCATTGGGAAAAGGGGGAGCCAGTAATCGTTAGCCATGTGCTTGATTGTACATCTGGTTTAAGTTGGGAACCACTTGTCATGTGGCGTGCATTCCGTCAGATGACCAAGACCAAGCATGAACAACATTTGGATGTGAAGGCAATTGATTGCTTAGATTGGTGCGAGGGTGAAATTAATATCCACCAATTCTTTACTGGGTATACAAAAGCTCGTGAGGATTGGCTTGATTGGCCTCAGATATTGAAATTAAAAGACTGGCCACCTTCTAATTTATTCGAGGAACGATTACCTCGACATTGTGCTGAGTTCATATCTTCCTTGCCCTTCAAGGAATATACTGATCCTCTTGGAGGTTCTCTTAACATAGCTGTGAAATGGCCTGCAAAATGTCTAAAGCCAGACATGGGGCCAAAGACATATATTGCTTATGGATTTCCTCAGGAGCTTGGACGAGGTGACTCAGTAACTAAGCTCCACTGTGACATGTCCGATGCAGTAAATGTGTTGACACATATTGCTGAAGTTAAATTGGAACCACAGCATCTTACTGCCATTGAGAAGTTGAAAGAAAAGCACCTTCAGCAAGACAAAAGGGAGCTGCTTGGTGATGATCAGGATGAAGAAACTAATGTTGACCTGCATAGTAATATATCTTCTACCATAAAGTCCCTGGAGAAGCAAAACAGTGTCCAAGTCTTGGAAAATGAAAATGGATATTGTGATGAAAAAGAAGTTGATCAGTTTCACAAACCCTCTGTTGGTAATGAGGTTGCTTCTGCTGATGAGAATGGTCTTTCATGCGGTTCAGAGCTCAAAGAGGTTGACAAAGTAAATATAAAGCAAGAAAGTGATTTGTTGTTTGCAGGGGATGGTTCAGAAGGTGCTCTGTGGGATATTTTTCGGAGGCAGGATGTACCTAAATTGCAGGAATATCTGAAGAAGCATTTCAGAGAGTTCAGGCATGTCCATTGCTGTCCTTTAAAGCAGGTTATTCATCCCATTCATGACCAGACCTTCTATTTGACCATGGAGCACAAGAGGAAGCTTAAAGAGGAGTACGGAATTGAGCCCTGGACTTTCATTCAGAAGCTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCTCACCAAGTCAGAAATCTGAAGTCATGTATTAAGGTTGCATTGGATTTTGTCTCTCCTGAAAATGTTGGGGAGTGCTTTCGTTTGACAGAGGAATTTCGGACTCTTCCCATAAACCATGGGTCTGCCGAGGACAAATTGGAGGTATGCCAAACATGGTGGTGGTACTGTGGGGTTCCCATTGCACATGGCAATGGTGATACATGTTTTCCGTAG 3084 0.4183 MTRGKKKQQGNTVTIPVDSNPTQQNTQSLDFDAGCEAVEIKAMDFTENNHDGAGGYSSVAEGVKRKRGRKSKEEEGMKTMLEGNLLEKNDVQDENHGGNGGVGDCSFVQGVKKKRGRKSKKDKDDMKMKKSEGNLLEKEGVQDVKHGENGGVGGSSSVQEGVRKKPGRNSNKDKQDMKGKEILESKLLEKKDVLDDNHGKISGVAEKRRGRKRKTLEEDGDVFGMPADSSGSGIQKQYNFRSPKVNIEVVMPKINQKDIKLNEEQSSMCHQCQRNDKGKVVRSMRFFSVFTTALPVIYLVLRYPHLTEHYIAEACPVCRGNCNCKACLRSDVLIKEMKGIETNEDKKVELSMRLLQLLLPYLMLLDEEQMIEKETEAKIQVIPASLVVNLTLSCSDNCKTSIFDYHRSCTECSFDLCLICCRELRSGQLVGGADPIMLEFVWRGRGYLHGEQENKMEKQIEANDVFKPVVREWSRSGWHAECNGSIPCPKVNDECNHGFLELRSVFGQHFITDLVCKANELAQTFKLETPGNFCSCLRLDGNTDVRFNNMMKAASRSDSSDNYLYYPRAVQLQDEDLRHFQWHWEKGEPVIVSHVLDCTSGLSWEPLVMWRAFRQMTKTKHEQHLDVKAIDCLDWCEGEINIHQFFTGYTKAREDWLDWPQILKLKDWPPSNLFEERLPRHCAEFISSLPFKEYTDPLGGSLNIAVKWPAKCLKPDMGPKTYIAYGFPQELGRGDSVTKLHCDMSDAVNVLTHIAEVKLEPQHLTAIEKLKEKHLQQDKRELLGDDQDEETNVDLHSNISSTIKSLEKQNSVQVLENENGYCDEKEVDQFHKPSVGNEVASADENGLSCGSELKEVDKVNIKQESDLLFAGDGSEGALWDIFRRQDVPKLQEYLKKHFREFRHVHCCPLKQVIHPIHDQTFYLTMEHKRKLKEEYGIEPWTFIQKLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECFRLTEEFRTLPINHGSAEDKLEVCQTWWWYCGVPIAHGNGDTCFP 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01570 1027 ProSiteProfiles JmjC domain profile. 697 990 IPR003347 -
Spst10g01570 1027 MobiDBLite consensus disorder prediction 89 179 - -
Spst10g01570 1027 MobiDBLite consensus disorder prediction 200 235 - -
Spst10g01570 1027 Pfam JmjC domain, hydroxylase 877 973 IPR003347 -
Spst10g01570 1027 SUPERFAMILY Clavaminate synthase-like 576 1010 - -
Spst10g01570 1027 MobiDBLite consensus disorder prediction 1 27 - -
Spst10g01570 1027 MobiDBLite consensus disorder prediction 46 77 - -
Spst10g01570 1027 MobiDBLite consensus disorder prediction 165 179 - -
Spst10g01570 1027 SMART cupin_9 678 990 IPR003347 -
Spst10g01570 1027 MobiDBLite consensus disorder prediction 200 221 - -
Spst10g01570 1027 Gene3D Cupin 568 998 - -
Spst10g01570 1027 MobiDBLite consensus disorder prediction 121 145 - -
Spst10g01570 1027 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 70 1007 IPR045109 GO:0032454|GO:0033169
Spst10g01570 1027 MobiDBLite consensus disorder prediction 62 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01570 Spst-Chr10 16361011 16368118 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Spst10g01570 JmjC 1.5e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01570 K15601 - gmx:112997634 1393.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01570 10 16361011 16368118 Spst10g01570 10 16361011 16368118 ECH