Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01566 ATGATGGTGACGGAGGGCAACGACAGCTGCGCCAGCGGAGTGCAGCACCATACCACCTCCTCCTCTTCCTCGCCCGCGCATACTCGTCAGCAGCGTCACAAGGTCGAAGTCTACAATGAGATTCTTCGCCGCTTGAAAGATTCCGGCGACGAAGAGGCTATGCAACCTAGCTTCAACGATCAGCTTTGGGCGCACTTTAATCGCCTCCCTACACGGTACGCGCTGGATGTGAATGTGGAAAGGGCAGCTGATGTTCTTATGCACAAGAGATTATTGCAGTTGGCGCATGATCCTGCTAATAGGCCTTCAATTGAAGTTCGATTAGTTCAGGTTCATCCCATATCTGATGGAAACTCAGCGGACACTTTTGAATCAGATGATCCGGGGACAGAATCTGGTCAAAGTTCTTCAAAGTACTCAAGCAGGCAGAGTATACACCCCCCTCCTGCTTTTGGTTCTTCCCCCAATCTTGAAGCATTGGCTCTTGAAGCAAATAGTTCCGAAGACATAGAAGAGGAACAATCTGTACATGCCAATGTCCAATATTTGCGGCCCATGCATGAAATCACCATCTCAACAGATGACAAGCCAAAGCTTCTTAGCCAGTTAACTGCTTTGCTTGCTGAGATTGGACTGAACATCCAAGAAGCACATGCCTTTTCCACCACTGATGGTTTCTCATTAGATGTGTTTGTTGTTGAAGGATGGCCCTATGAGGAAACAGAAAAGCTTAAAGCAGCTTTGGAAAGAGAAGTCTTGAAGAAGATTGAGGTGAGGTCCAGTCCACAATCTGTATCTTCCGTTGATGAGTCTGATCAAGCAAAGATGAAAAGCGAACTGGATCATTTGACAATACCAAATGATGGGACTGATGTTTGGGAAATAGATCCTAAACATTTGAAATATGGAACTCAAATTGCATCTGGTTCATATGGTGAACTATTTAAAGGTGTATACTGTAGCCAGGAAGTAGCCATCAAAGTTCTCAAGCCTGAGCATGTAAATTCAGAATTGCAGAGAGAATTCGCCCAAGAAGTCTATATCATGAGAAAGGTTCGACACAAGAATGTTGTACAATTCATAGGAGCATGTACCAAGCCCCCACGTTTATGCATAGTAACAGAATTTATGTCCGGTGGAAGTGTTTATGATTACCTACATAAGCAAAAGGGCTTTTTTAAATTTCCTACCCTACTCAAAGTAGCAATTGATATTTCTAAAGGGATGAATTACTTGCACCAACATAACATAATCCATAGAGACTTGAAGGCTGCCAACCTTCTGATGGACGAAAATTGTATAGTAAAGGTTGCTGATTTTGGGGTTGCTAGAGTTAAAGCTCAATCCGGCGTTATGACAGCAGAAACCGGAACATATAGATGGATGGCTCCTGAGGTTATAGAACACAAGCCGTATGATCACAAGGCTGATGTATTTAGTTTTGGTGTTGTTTTATGGGAGTTGCTTACTGGAAAGCTTCCATACGAATATTTAACCCCCCTACAGGCAGCTATAGGAGTGGTTCAAAAGGGTTTGCGACCCACCATCCCCAAGAACACCCATCCAAAGTTTGTTGACCTTCTTGAGAGGTCCTGGCAGCAAGACCCAACGTTGAGACCCGATTTCTCTGAAATTATCGAGATCCTTCAGCAGTTAGCAAAGGAGGAAGAGGATGACGCGCAAGAAATATTGAATGACTTACCGCATGCTGAGTGCCAATTACAGTGTACCTACATCTGCTACATAGCTCAAATGAAACAAGAGCTTGCAGGTTTGGTTAAAGCTTATGCATTCATATTTTACACAGGCAGAGACGGAGAACCAGACTCAGATGCTTGGAGGGGTCATGAAAGATACTGGCAGAAAAGAGAAACAGACATCAGCGGCGATAACGACGGCAACACAGGACACCTGGTGGTTTGGTCTGTGATGACATTACTTCTCTTGATGCAATCTATAAGAAAATCCTTTAAATCTTATGGTTCCTACAAACAATCAACAAGTTTTTACGGCGCCGGGAACCCCGACTCCGACCACGAGAAGCTTCCGATTTTACTCGACCAAGAAGCGCGGCGCCACAGTGAAATGACCGCCGGCGACTGCGTCGTCAAAATCGACGATGCCGCCAACTCATCGCAGGGTAACAGGATTTGGCGGGAGTCGAGCTACGATTTCTTTAATGGAGAAGGCAACTCCTCCGCCGCTGTTGCCGCCGACGATAGTTTCGATTTCCGGCAGACGGAAGATCCGCCGTCGCAGCTTATTGGGCGGTTCCTCCACAAGCAGAAGGCCTCCGGTGAAATGCAGCTGGATATGGATTTGGAAATGGAGGAGCTCCAGCGCGATGCCGAAGGCGAAAGGTTAACACCGGTGGCGGAGTCTCCCATGAACTACCGCATGTCCAGGGAGCAGAAGGTCTCCTTCGAAGAACCGGCTTCCAGTGTGAGTATCCCCGAAGCGCAGAACGACGTCTTCAGGAGAAGGTACAACAAGGACTCGCCGTCGTTAGCGGAATACAACCTCCCTCCGCAGCCGCCGCAGTACGACCGTCGCCGCTCGCCGTCACCGTCGCAGTCGCCTGCCGGAGATGGTGAAGTCCTTCGGTGCACCTCGAACGCTTCATTCGAGAGAAACCTCTCCATGCAGAGAAAATCGGCGTTGTTGAAGGCGAAAACGAGGTCGAGGTTGCTGGACCCACCAGACGAACCCGACAGGAAATCGGGTAAGGTTTTGAAATCGGGTCAGCTCCTTTCGGGGATTTTAGGAAAGAAGCCTGATGAGGAGGAGGACGATCCGTTTCTGGAAGAGGATCTTCCTGATGAGTTTAAGAAGACTCATTTCAGCTTTTGGATTCTTCTGGAGTGGGTGAGTTTGGTTTTGATCATTGGGTTGTTGATAACCACTCTTTGCATTCCCTTTCTGAGGGAGAAGGATATGTGGCAGCTTAGGTTGTGGAAATGGGAGGTTATGGTTCTGGTTTTGATCTGTGGGAGGTTGGTGTCTGATTGGGTTATTAGGATTGCCGTGTTCTTTATCGAGAGGAACTTCCTTTTGAGGAAGAGGGTGTTGTATTTTGTGTACGGTGTGAAGAAGGCGGTTCAGAATTGTCTTTGGTTGGGGCTCGTGTTGATTGCGTGGCATTTGTTGTTTGACAAGAGGGTGCAAAGGGAAACCAAAAGTAATTTCCTTGGGTATGTTAATAAGGTGTTGGTGTGTTTCCTCGTGGGGACTTTGATGTGGTTGGTGAAGACTCTCATGGTTAAGGTTTTGGCTTCTTCTTTCCATGTGAGTACCTACTTTGATAGGATTCAGGAGTCACTGTTTAATCAGTTTGTGATTGAGACGCTTTCGGGGCCTCCTTTGGTGGAGATTCAGAAGGCTGAGGAGGAGGAGGAGAAGCTTGCTGATGAAGTCCAGAAGCTGCAGAATGCTGGGGTTACCATACCCCCTGACCTTAGGGACTCTGCTTTTTCTAATATTAAGAGTGGGAGGTTGAGGAGTGGAGTGCTCTCCAAGAGCCCTAGAGTTAAGAGTGCCAAGTTTTCGCGGCCTCTTTCTAAGAAGTCTGACGATGGGAATGCCATCACCATTGATAACCTGCATAAGCTCAATCCCAACAATGTGTCTGCCTGGAATATGAAAAGGTTGATGAACATGGTCCGGTATGGAGCTCTTACTACCTTGGATGAGCAAATACTTGATAGCGCCAATGATGATGAGAATGCCACGCAAATTAGAAGTGAAAACGAGGCAAAAGCTGCTGCTAAGAAAATATTTCATAATGTTGCTAGGCGTGGGTGCAGGTATATATATCCCGCTGACTTGATGCGATTTATGCAAGAAGATGAAGCTGCAAAAACCATGAATCTCTTTGAAGGAGCATCTGATTCTGGGAAAATTAGCAAAGCAGCCTTGAAGAACTGGGTGGTCAATGCCTTCAGGGAAAGGAGAGCACTTGCTTTGACACTGAATGACACCAAAACGGCAGTGAACAAACTTCATCGAATGCTCAATTTTATGGTTGCAATTGTTGTACTCATTATTTGGCTCTTGATATTGGAACTTGCCACCACCAAATTTCTTGTCTTTCTGAGTTCACAAATTGTCTTGGTTGCATTTATATTTGGAAACACCTGCAAGACCATATTTGAAGCAATTATTTTCCTATTTGTCATGCACCCTTTTGATGTGGGAGACCGATGCGAAATCGATGGGGTTCAGATGGTGGTGGAAGAAATGAACATATTGACAACCATATTTTTGAAGTTTGATAATCAAAAGATCATCATACCTAACAGTGTCCTTGCTACCAAAGCTATATATAACTATTACCGGAGTCCTGATATGGGAGATAGTATCGAATTCTACGTACACATATCCACCCCAATTGATAAGATTTCCCTTATTAAACACAGAATACAAAGTTACTGTGATAACAAGAAGGAGCACTGGTATCCTTCACCTATTGTAGTAATCAGGGATTATGAGTCATTAAACATGGTGAAAATGGCTATCTGGCCAACTCAAAAAATGAACTTCCAAGACCAGGGAGAAAGGTATATAAGGAGATCCCTTTTGCTTGAAGAGTTGATCAAGATTTTCAGGGAACTCGACCTTAATTACCGGCTCCTGCCCATGGACATTAACGTGAGAGCCATGCCTACCTCTTCTGAACGGCTTCCACCTAGTTGGGCATCAATTCCAAGTTGA 4710 0.4561 MMVTEGNDSCASGVQHHTTSSSSSPAHTRQQRHKVEVYNEILRRLKDSGDEEAMQPSFNDQLWAHFNRLPTRYALDVNVERAADVLMHKRLLQLAHDPANRPSIEVRLVQVHPISDGNSADTFESDDPGTESGQSSSKYSSRQSIHPPPAFGSSPNLEALALEANSSEDIEEEQSVHANVQYLRPMHEITISTDDKPKLLSQLTALLAEIGLNIQEAHAFSTTDGFSLDVFVVEGWPYEETEKLKAALEREVLKKIEVRSSPQSVSSVDESDQAKMKSELDHLTIPNDGTDVWEIDPKHLKYGTQIASGSYGELFKGVYCSQEVAIKVLKPEHVNSELQREFAQEVYIMRKVRHKNVVQFIGACTKPPRLCIVTEFMSGGSVYDYLHKQKGFFKFPTLLKVAIDISKGMNYLHQHNIIHRDLKAANLLMDENCIVKVADFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGVVLWELLTGKLPYEYLTPLQAAIGVVQKGLRPTIPKNTHPKFVDLLERSWQQDPTLRPDFSEIIEILQQLAKEEEDDAQEILNDLPHAECQLQCTYICYIAQMKQELAGLVKAYAFIFYTGRDGEPDSDAWRGHERYWQKRETDISGDNDGNTGHLVVWSVMTLLLLMQSIRKSFKSYGSYKQSTSFYGAGNPDSDHEKLPILLDQEARRHSEMTAGDCVVKIDDAANSSQGNRIWRESSYDFFNGEGNSSAAVAADDSFDFRQTEDPPSQLIGRFLHKQKASGEMQLDMDLEMEELQRDAEGERLTPVAESPMNYRMSREQKVSFEEPASSVSIPEAQNDVFRRRYNKDSPSLAEYNLPPQPPQYDRRRSPSPSQSPAGDGEVLRCTSNASFERNLSMQRKSALLKAKTRSRLLDPPDEPDRKSGKVLKSGQLLSGILGKKPDEEEDDPFLEEDLPDEFKKTHFSFWILLEWVSLVLIIGLLITTLCIPFLREKDMWQLRLWKWEVMVLVLICGRLVSDWVIRIAVFFIERNFLLRKRVLYFVYGVKKAVQNCLWLGLVLIAWHLLFDKRVQRETKSNFLGYVNKVLVCFLVGTLMWLVKTLMVKVLASSFHVSTYFDRIQESLFNQFVIETLSGPPLVEIQKAEEEEEKLADEVQKLQNAGVTIPPDLRDSAFSNIKSGRLRSGVLSKSPRVKSAKFSRPLSKKSDDGNAITIDNLHKLNPNNVSAWNMKRLMNMVRYGALTTLDEQILDSANDDENATQIRSENEAKAAAKKIFHNVARRGCRYIYPADLMRFMQEDEAAKTMNLFEGASDSGKISKAALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFMVAIVVLIIWLLILELATTKFLVFLSSQIVLVAFIFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGVQMVVEEMNILTTIFLKFDNQKIIIPNSVLATKAIYNYYRSPDMGDSIEFYVHISTPIDKISLIKHRIQSYCDNKKEHWYPSPIVVIRDYESLNMVKMAIWPTQKMNFQDQGERYIRRSLLLEELIKIFRELDLNYRLLPMDINVRAMPTSSERLPPSWASIPS 1569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01566 1569 MobiDBLite consensus disorder prediction 115 150 - -
Spst10g01566 1569 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 692 1564 IPR016688 -
Spst10g01566 1569 SUPERFAMILY Protein kinase-like (PK-like) 285 549 IPR011009 -
Spst10g01566 1569 FunFam Serine/threonine-protein kinase isoform 1 290 378 - -
Spst10g01566 1569 MobiDBLite consensus disorder prediction 890 910 - -
Spst10g01566 1569 MobiDBLite consensus disorder prediction 831 867 - -
Spst10g01566 1569 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Spst10g01566 1569 SUPERFAMILY Sm-like ribonucleoproteins 1384 1443 IPR010920 -
Spst10g01566 1569 Coils Coil 1121 1144 - -
Spst10g01566 1569 ProSiteProfiles ACT domain profile. 188 263 IPR002912 -
Spst10g01566 1569 MobiDBLite consensus disorder prediction 8 28 - -
Spst10g01566 1569 FunFam Predicted mechanosensitive ion channel 1394 1443 - -
Spst10g01566 1569 ProSiteProfiles Protein kinase domain profile. 300 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g01566 1569 SMART serkin_6 300 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g01566 1569 Pfam Protein tyrosine and serine/threonine kinase 300 549 IPR001245 GO:0004672|GO:0006468
Spst10g01566 1569 Pfam Mechanosensitive ion channel 1336 1523 IPR006685 GO:0016020|GO:0055085
Spst10g01566 1569 MobiDBLite consensus disorder prediction 894 909 - -
Spst10g01566 1569 Coils Coil 546 566 - -
Spst10g01566 1569 CDD STKc_MAP3K-like 306 549 - -
Spst10g01566 1569 MobiDBLite consensus disorder prediction 1 34 - -
Spst10g01566 1569 MobiDBLite consensus disorder prediction 780 815 - -
Spst10g01566 1569 Gene3D - 1394 1443 IPR023408 -
Spst10g01566 1569 Gene3D Phosphorylase Kinase; domain 1 290 378 - -
Spst10g01566 1569 Gene3D Transferase(Phosphotransferase) domain 1 379 589 - -
Spst10g01566 1569 SUPERFAMILY ACT-like 186 250 IPR045865 -
Spst10g01566 1569 CDD ACT_TyrKc 186 253 - -
Spst10g01566 1569 MobiDBLite consensus disorder prediction 115 155 - -
Spst10g01566 1569 PRINTS Tyrosine kinase catalytic domain signature 374 387 IPR001245 GO:0004672|GO:0006468
Spst10g01566 1569 PRINTS Tyrosine kinase catalytic domain signature 476 498 IPR001245 GO:0004672|GO:0006468
Spst10g01566 1569 PRINTS Tyrosine kinase catalytic domain signature 457 467 IPR001245 GO:0004672|GO:0006468
Spst10g01566 1569 PRINTS Tyrosine kinase catalytic domain signature 520 542 IPR001245 GO:0004672|GO:0006468
Spst10g01566 1569 PRINTS Tyrosine kinase catalytic domain signature 411 429 IPR001245 GO:0004672|GO:0006468
Spst10g01566 1569 Gene3D - 185 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01566 Spst-Chr10 16327537 16344248 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01566 700 1566 Mechanosensitive Ion Channel Family AT1G78610 56.828 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Spst10g01566 PK_Tyr_Ser-Thr 2.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01566 K22048 - gmx:102665658 1481.08