Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01555 ATGACAGAACCTAATTGCAACGTGTCACTCTTGGCACTTGACACTCTGGCATCATGGAAATTTGGTTTCAAGATGGGCGTGGCTCAGAATGTTCACGATACGGAGGATGGTACCTTGGAGATTGGAATGGAATACAGAACTGTATCTGGAGTTGCTGGACCATTGGTCATTCTTGACAAAGTTAAGGGACCCAAATTTCAAGAGATTGTTAATATTCGTTTAGGAGATGGAACTACTCGGCGTGGACAAGTTCTAGAGGTCGATGGTGAAAAGGCTGTTGTTCAGGTATTTGAAGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTTACTGGAGAGGTGTTAAAAACTCCTGTCTCACTGGACATGCTTGGGCGCATATTTAATGGTTCTGGAAAACCAATTGATAATGGTCCACCAATTTTACCTGAGGCATACCTGGATATTTCTGGAAGTTCTATCAATCCTAGTGAGAGAACCTATCCCGAGGAGATGATACAGACAGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGGGGTCAAAAGATCCCTTTATTCTCAGCAGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGTCGTCAGGCTGGCTTAGTGAAGCGACTAGAGAAATCTGATAATCTACTTGAGGGAGGAGAAGAGGACAATTTTGCTATTGTTTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGCTCAATGGAGAGAGTGACTCTTTTTCTTAATTTGGCAAACGATCCCACAATTGAACGTATTATCACTCCTCGTATTGCTCTCACTACTGCTGAATTTTTGGCTTATGAATGTGGCAAGCACGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTGCCGGGAAGACGTGGTTATCCTGGATACATGTATACAGATCTTGCAACAATTTATGAACGTGCCGGAAGAATTGAGGGACGTAAAGGCTCTATTACACAAATTCCAATTTTAACCATGCCCAACGACGATATTACGCATCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAACAGACAGATATACCCACCTATCAATGTCCTCCCATCACTATCTCGTTTGATGAAGAGTGCTATTGGTGAGGGAATGACCAGAAGGGATCATGCTGATGTGTCCAATCAGCTCTATGCAAATTATGCTATTGGAAAGGATGTTCAGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCAGAGGACCTGCTGTATCTGGAATTCTTGGAGAAATTTGAGAGGAAGTTTGTTGCCCAGGGAGCTTATGACACCCGCAATATATTCCAGTCACTAGATCTTGCTTGGACTTTACTCCGGATTTTCCCTCGTGAACTTCTTCATCGCATACCAGCCAAGACTCTTGACCAGTATTACAGCCGAGATGCTGTTTGGGATGGCTGGCGTCAATTGCATTGTGGAATGCTCATATTCCCTGGTGTTGGAATATGTGGAGACTGCTTTCCCAATAAGAATTTTTGGGGAAAAATGGATGCAGAGATTGATCACTATGCGGTGCTAGGGTTACCATCGGGGGAAGAAGGTGCGCAGCTAACGGAGAAAGAAATCAACAAGGCCTACCGATGGAAGGCTCTGGAACTGCACCCCGACAAGAGGCCCGACGACCCCAACGCCGCCGCCAACTTCCAACAGCTCCGCACCTCCTACGACATTCTCCGGGACGACAAAGCCCGTAAATTGTTCGATGACCTATTGCGCGTAAAGCGCGAGCGCGAGCTTCGCCACTCCCAGCGCGACGGAAAGCGCCGGAAGATGGTTTCCGATCTCGAGCGCCGGGAACGCGACGCCAACGCCCCCGACCCCGCCGCCAAGGAGCGCGAAGAGGAGGCCAGGATCGCGCGCCAGCTGAAGGAGGAGATCGCGAGAATTCGTGCCATGCACGGGATGAAGGCGGCGCCGCCACCCCCACCGCAACCGGAGGAGAGTGGCCGTGCCGGTGGGGGAGGTGGAGTGGATCAAGAGAAGGTCCTGAAGGTTTCGTGGGAGAAGGTGGGTGAGGATTATTCAGCTGATAAGTTGAGGGAATTGTTTTCAAAGTTTGGTGAAGTGGAAGATGTTGTCATCAAAGGAAGTAAGAAGAAGGGTTCTGCACTCGTAGTTATGGCCACTAAAGAAGGAACTGTTGCTGCTACGGGAAGTGTGATTGGTCATCTTGCTAATCCGTTGCTGGTTTTACCGCTTAAACCGGCAACTGTGGCAGATTCTTCCAGTGTTCCGAAGTCTGCTGAAACTGCCAGGATGAGTAATCTGGTTGGAGCTGGGTATCAAGCTTTTGAGGATTCTGTTCTGAAGAAACTGCAAAAGGCTGCGGAAAAGCAAAGATGA 2487 0.4729 MTEPNCNVSLLALDTLASWKFGFKMGVAQNVHDTEDGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEFLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLEKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDAVWDGWRQLHCGMLIFPGVGICGDCFPNKNFWGKMDAEIDHYAVLGLPSGEEGAQLTEKEINKAYRWKALELHPDKRPDDPNAAANFQQLRTSYDILRDDKARKLFDDLLRVKRERELRHSQRDGKRRKMVSDLERRERDANAPDPAAKEREEEARIARQLKEEIARIRAMHGMKAAPPPPPQPEESGRAGGGGGVDQEKVLKVSWEKVGEDYSADKLRELFSKFGEVEDVVIKGSKKKGSALVVMATKEGTVAATGSVIGHLANPLLVLPLKPATVADSSSVPKSAETARMSNLVGAGYQAFEDSVLKKLQKAAEKQR 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01555 828 Coils Coil 660 680 - -
Spst10g01555 828 CDD DnaJ 549 608 IPR001623 -
Spst10g01555 828 Gene3D DnaJ domain 540 642 IPR036869 -
Spst10g01555 828 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 711 783 IPR000504 GO:0003723
Spst10g01555 828 CDD ATP-synt_V_A-type_beta_N 44 115 - -
Spst10g01555 828 ProSitePatterns ATP synthase alpha and beta subunits signature. 392 401 IPR020003 GO:0005524
Spst10g01555 828 MobiDBLite consensus disorder prediction 683 705 - -
Spst10g01555 828 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 407 IPR027417 -
Spst10g01555 828 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 29 509 IPR022879 -
Spst10g01555 828 FunFam V-type proton ATPase subunit B, brain 53 512 - -
Spst10g01555 828 CDD ATP-synt_V_A-type_beta_C 411 505 - -
Spst10g01555 828 ProSiteProfiles dnaJ domain profile. 549 619 IPR001623 -
Spst10g01555 828 Pfam ATP synthase alpha/beta family, beta-barrel domain 48 114 IPR004100 GO:0046034|GO:1902600
Spst10g01555 828 SUPERFAMILY Chaperone J-domain 543 619 IPR036869 -
Spst10g01555 828 SUPERFAMILY RNA-binding domain, RBD 719 764 IPR035979 GO:0003676
Spst10g01555 828 Gene3D - 703 791 IPR012677 -
Spst10g01555 828 CDD RRM_DNAJC17 709 781 IPR034254 -
Spst10g01555 828 ProSitePatterns Nt-dnaJ domain signature. 596 615 IPR018253 -
Spst10g01555 828 Pfam DnaJ domain 549 616 IPR001623 -
Spst10g01555 828 Hamap V-type ATP synthase beta chain [atpB]. 42 510 IPR022879 -
Spst10g01555 828 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 719 764 IPR000504 GO:0003723
Spst10g01555 828 NCBIfam V-type ATPase subunit B 44 510 IPR005723 GO:0033180|GO:0046961|GO:1902600
Spst10g01555 828 Gene3D - 53 511 - -
Spst10g01555 828 SMART dnaj_3 548 611 IPR001623 -
Spst10g01555 828 CDD V_A-ATPase_B 116 409 - -
Spst10g01555 828 PRINTS DnaJ domain signature 591 611 IPR001623 -
Spst10g01555 828 PRINTS DnaJ domain signature 551 569 IPR001623 -
Spst10g01555 828 PRINTS DnaJ domain signature 574 589 IPR001623 -
Spst10g01555 828 MobiDBLite consensus disorder prediction 627 664 - -
Spst10g01555 828 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 171 401 IPR000194 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01555 Spst-Chr10 16216267 16227784 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01555 24 510 Primary Pumps ATPases(2) AT4G38510 96.099 0.0 961
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01555 K02147 - gmx:100793764 947.192