Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01548 ATGACTATGTACTGGTTTCTTTTATGCAGCTATATTGAGTTTTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCGGGCCAACCACTTCTAGGTCAACCAGTGATGGTGAAGCCATCAGAAGCGGAAAAGAATTTGGTTCAGTCCATAACATCTGTTGCTAGTGGACCCACTGGACTTATAGGTCCCTATTCTGGGGGAGCAAGAAGGCTCTATGTTGGAAATCTACATATTAGTATGAGTGAAGCAGATATTCGTAAGGTGTTTGAAGCATTTGGTCAAGTTGAGCTAGTCCAGCTGCCTCTTGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGTACGCCTTGAAGATGCACGAAATGCTCAGAGCTTGAACGGACAATTAGAGATTGGTGGTAGAACAATCAAGGTGTCGGCTGTTACTGATCAATCTGGAATGCAAGAAGTTGGAGGAAATACTGGTGATTTTGATGATGATGAAGGAGGTGGCTTGTCATTGAATGCATGTTCTCGAGCAATGCTCATGCAGAAGTTGGATCGCAGTGGCACTGCATCAAGCATGGTTGGTTCCCTGGGTAATTCTGTTGTCAACAACACTGGTCTTAATCTACCAGCAACAGGAAACATAATCGCAGCTGTGCCCATGGGTTCTCCCCTTTCTTCTGTTCCTGCAGTAGCTGGATTGGCAGGCGGAGGTCTCCAAATTCCTACGGTTACAATTCCTTCTATTGACACAATCGGTGCTCCAAGTGAATGCTTAATGTTAAAGAACATGTTTGATCCCAAAGACGAGACTGAACCAGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCCAAGTTTGGGACGTTAAAACACATACATGTTGATAAGAAGAGTGCTGGTTTTGTCTACTTACGTTTTGAAGTTACCCAATCTGCAATAAGTGCTCAGCGGTCCTTGCACGGAAGATGGTTTGCTGGAAAGATGATCACTGCAAGCTTCATGGTGCCCCAGTCATACGAGGATAAATTCCCAGACAGCATATAA 1053 0.4387 MTMYWFLLCSYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSITSVASGPTGLIGPYSGGARRLYVGNLHISMSEADIRKVFEAFGQVELVQLPLDESGHCKGFGFVQFVRLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMQEVGGNTGDFDDDEGGGLSLNACSRAMLMQKLDRSGTASSMVGSLGNSVVNNTGLNLPATGNIIAAVPMGSPLSSVPAVAGLAGGGLQIPTVTIPSIDTIGAPSECLMLKNMFDPKDETEPDFDLDIKEDVEAECSKFGTLKHIHVDKKSAGFVYLRFEVTQSAISAQRSLHGRWFAGKMITASFMVPQSYEDKFPDSI 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01548 350 SMART rrm1_1 257 335 IPR000504 GO:0003723
Spst10g01548 350 SMART rrm1_1 71 143 IPR000504 GO:0003723
Spst10g01548 350 Gene3D - 252 350 IPR012677 -
Spst10g01548 350 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 161 274 IPR029123 -
Spst10g01548 350 FunFam CC1-like, splicing factor 65 173 - -
Spst10g01548 350 CDD RRM3_RBM39_like 255 337 - -
Spst10g01548 350 Gene3D - 65 171 IPR012677 -
Spst10g01548 350 SUPERFAMILY RNA-binding domain, RBD 253 336 IPR035979 GO:0003676
Spst10g01548 350 FunFam Splicing factor, CC1-like protein 251 350 - -
Spst10g01548 350 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 256 339 IPR000504 GO:0003723
Spst10g01548 350 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 10 349 IPR006509 GO:0003723|GO:0005634|GO:0006397
Spst10g01548 350 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 280 332 IPR000504 GO:0003723
Spst10g01548 350 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 141 IPR000504 GO:0003723
Spst10g01548 350 SUPERFAMILY RNA-binding domain, RBD 66 162 IPR035979 GO:0003676
Spst10g01548 350 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 147 IPR000504 GO:0003723
Spst10g01548 350 NCBIfam splicing factor, CC1-like family 10 348 IPR006509 GO:0003723|GO:0005634|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01548 Spst-Chr10 16109733 16113110 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01548 68 345 Eukaryotic Initiation Factors Gene Family AT3G16380 24.068 8.11e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01548 K13091 - gmx:100789839 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01548 10 16109733 16113110 Spst10g01548 10 16109733 16113110 ECH