Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01545 ATGCATATGCAGTTTCCTTTTGTGGTTAACAATGTGAAGAATGATGGAGTAGTTGAGGGATCAAGTAACATAGCCACTTGGCTTTTGGGAACTCAAACAGGAAGTTCACTATCATCATCTAGGTTTACATATCTCATTCGTTTTCTATTTATACGGGGTATCTGCGTGGATATGCATGTGGGTGTTTCAAAAGTGCAAGGTGACATGAACATCATCATGCAAAACTTAGTGGAAAGACTAAGACCCCTAGTGGGTTTGAACGGATGGGACTACTGTATATACTGGAAATTGAGTGAAGACGAAAGGTTGCTAGAGTTGTTGGGATGCTGTTGTGGTGGCACTGAAAGCAACCAAAATGCTGGGGAAGAACATCTTTTCCCTGTCTCTTCTGTGGCTTCATGCAGAGATACCACCTATCCACACCCCAGAACAAAGCCCTGTGATCTTCTTTCCCAACTTTCCACTTCCATACCAATAGATAATTCTGGGTATGAAACAATTGGGACCCAGGTTTTGATTTCAGTGCCAGGTGGACTTGTTGAGCTGTTTGTCCCTGAAGACCATCAAGTAATAGATTTTGTTACAAGCCAGTGCATTGAAGCCATGAACCACTCAATGAGCTTCAACATTGACGTGAATGCTATGAGCAACATGCAACCAAACCCACTTTTAGGCGATGAAAACGAAGGGAACAACAGGAACAATCATTTCCACCCTTCAGAACATGTCATGACTATGGACCACCGCATTGGCATGTGCAGTTCTCCACTAAACTTCATGCAGCAGTTCAACTACAACCAGCAGAACAGAATGAAGGGCGATGCCTTTTCTGAAGAATACCAAGGTTCCTTCCTTCATGACAAGCAAAGCAACCAAGAAGAGGAGCATGACAAGTATCAGAAAAGCCTCATGACAACAGATTCACAATACGTGGAGCCTTTGGACGCAAAAGAGAAGCAAGAGGAAGACAAGGAGTTGCTGAAACACGTCGTTGGTCGATCAGATTCAATGTCAGACTGCAGCGAGCAGAACGAAGAGGAGGAAGATGGAAAGTATAGGAGGAGGAATGGGAAAGGCAACCAGTCCAAGAACCTTATGGCTGAGAGGAAGAGAAGGAAGAAGCTCAATGACAGGTTATACCACCTTCGTTCTTTGGTTCCAAGGATCTCTAAGTTGGATAGGGCCTCCATCCTTGGAGATGCTATTGAGTTTGTGAAGGATTTGCAGAAGCAAGTGAAGGAGCTCCAAGATGAGCTTGAGGAGAACGCAGACACTGAAAGCAACTGCATCAATGGGAATAATAACAACAATAACAACAGCAATAATCAATATGTGGGTGTAGGTGAACTATGTCCAAACTCTGAACATGGTAAGGCCCAAACTGGGTTGCATGTGGGGACATCAGGGAATGGCTATGTGTCCAAACAAAAGCAGGAAGATGCTGCTCTCATTGACAGGCAGACCCAGCAGATGGAGCCGCAAGTGGAAGTGTCTCTGATAGATGGGAATGAGTATTTTGTGAAGGTGTTCTGTGAACACAGGCCTGGTGGGTTTGTGAAATTGATGGAGGCGTTGAACACCATTGGCATGGATGTAGTGCATGCCACTGTAACCAGCCACAAGGGCCTCGTGTCAAATGTTTTTGAAGTGGAGAAAAGAGACAGTGAAACGGTTGAGGCTGAAGACGTGAGAGAGTCGCTGCTGGAACTTACGCGGAACCGTTACAGATGGACTCATCATGAGGTGACAGCAAAGTCAGATCAACATCCTCTTCATAACCACCATATAGGTTCCTATTCCCAGCATTTTCATAGTTAA 1818 0.4477 MHMQFPFVVNNVKNDGVVEGSSNIATWLLGTQTGSSLSSSRFTYLIRFLFIRGICVDMHVGVSKVQGDMNIIMQNLVERLRPLVGLNGWDYCIYWKLSEDERLLELLGCCCGGTESNQNAGEEHLFPVSSVASCRDTTYPHPRTKPCDLLSQLSTSIPIDNSGYETIGTQVLISVPGGLVELFVPEDHQVIDFVTSQCIEAMNHSMSFNIDVNAMSNMQPNPLLGDENEGNNRNNHFHPSEHVMTMDHRIGMCSSPLNFMQQFNYNQQNRMKGDAFSEEYQGSFLHDKQSNQEEEHDKYQKSLMTTDSQYVEPLDAKEKQEEDKELLKHVVGRSDSMSDCSEQNEEEEDGKYRRRNGKGNQSKNLMAERKRRKKLNDRLYHLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEENADTESNCINGNNNNNNNSNNQYVGVGELCPNSEHGKAQTGLHVGTSGNGYVSKQKQEDAALIDRQTQQMEPQVEVSLIDGNEYFVKVFCEHRPGGFVKLMEALNTIGMDVVHATVTSHKGLVSNVFEVEKRDSETVEAEDVRESLLELTRNRYRWTHHEVTAKSDQHPLHNHHIGSYSQHFHS 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01545 605 MobiDBLite consensus disorder prediction 286 307 - -
Spst10g01545 605 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 359 408 IPR011598 GO:0046983
Spst10g01545 605 Pfam Helix-loop-helix DNA-binding domain 364 409 IPR011598 GO:0046983
Spst10g01545 605 Coils Coil 398 428 - -
Spst10g01545 605 CDD bHLH_AtAMS_like 362 427 - -
Spst10g01545 605 MobiDBLite consensus disorder prediction 425 441 - -
Spst10g01545 605 MobiDBLite consensus disorder prediction 329 370 - -
Spst10g01545 605 MobiDBLite consensus disorder prediction 586 605 - -
Spst10g01545 605 MobiDBLite consensus disorder prediction 288 302 - -
Spst10g01545 605 ProSiteProfiles ACT domain profile. 506 576 IPR002912 -
Spst10g01545 605 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 260 572 - -
Spst10g01545 605 Gene3D - 348 424 IPR036638 GO:0046983
Spst10g01545 605 MobiDBLite consensus disorder prediction 419 441 - -
Spst10g01545 605 CDD ACT_UUR-ACR-like 507 570 - -
Spst10g01545 605 SMART finulus 365 414 IPR011598 GO:0046983
Spst10g01545 605 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 361 421 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01545 Spst-Chr10 16062117 16065659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01545 73 589 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 43.393 2.55e-123 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst10g01545 HLH 4.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01545 - - gmx:100798282 804.283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01545 10 16062117 16065659 Spst10g01545 10 16062117 16065659 ECH