Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01541 ATGTTTTCTTATGATGGCACAGGCATTCACTTTGTCAAGGGGATTGAGGAACACAACCTTTGCAGTGGGGAACTGTTCATGCAGAAGTTACCTCCAGGTTTTGTGATTAAATATTGGGTAGACATAGCAAACCCACTACTCCTTCTGCTTCCTGAAGGCGCTAAATGGAAAAGGAATTGGACAAGAATTGGTGTTGATGTTTGGTTAGTAGATACATGGAAGAATTTTGCGGAGTTTTATTCTTTGGATGTGGATAATTACTTGCTGTTCAAGTACCTGGGAAAGTCACAGTTTGAAGTTGTAATATTTAATCACAGTGGCGTGGAAATAGAGTACCCTTTGATGGAAACAACTTTAGATGCTGAAGAGAATGATGATTCTTTACCAGTTTCTCCTTTTACTAAGAAGCTGAAAACCAGCACAAAAGAGGAACCTGGTAGTTATTATTCCTCTCAACATGTTGAAACTGAATGTGTTCAATCTCAAAGGATTAAGGTTGAGTCAAAGGAGTTCCATGCAGATGATTCTGATGATGAAAAACCCAAAATCAGAGATTCTAAGGATGGGACTATTAAAAGTGAGAATTTGCTTGAAGATACTAAAATAAGCATTTCTCTAGCTAGAGCTAGAGCCCAAGCTTTCCGCTCTGAGAATCCTTTGTATCCATCATACATTCAAAGGAATATTATGGTGATGCCTGCTAGTATCATATCAGAAGAAGAGCAACAGAAAGAGGAGAACAGTGTTACTCTTAGGATATCTGAGGAAAGAGCTTGGCATGTGCAGTTCTATAGGAATTATAGCAGTGGCCAAATAAAACTTACTTCTGGTTGGATGAATTTTGTGCAGGATAATAACTTGAAAGTAGGGAATGTATGTGTTTTTGAGAAAGTTAATGAGAAGCCAGGAATTTCATTCAGAGTTCATATTTATTGTGACAAAGAAGAATCAAGTCCTTCAAAGTTTCCAGTGCCCAATGAGAGGCTTAAAGACACTCCAATTTCTTGA 1008 0.379 MFSYDGTGIHFVKGIEEHNLCSGELFMQKLPPGFVIKYWVDIANPLLLLLPEGAKWKRNWTRIGVDVWLVDTWKNFAEFYSLDVDNYLLFKYLGKSQFEVVIFNHSGVEIEYPLMETTLDAEENDDSLPVSPFTKKLKTSTKEEPGSYYSSQHVETECVQSQRIKVESKEFHADDSDDEKPKIRDSKDGTIKSENLLEDTKISISLARARAQAFRSENPLYPSYIQRNIMVMPASIISEEEQQKEENSVTLRISEERAWHVQFYRNYSSGQIKLTSGWMNFVQDNNLKVGNVCVFEKVNEKPGISFRVHIYCDKEESSPSKFPVPNERLKDTPIS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01541 335 ProSiteProfiles B3 DNA-binding domain profile. 30 106 IPR003340 GO:0003677
Spst10g01541 335 MobiDBLite consensus disorder prediction 121 154 - -
Spst10g01541 335 MobiDBLite consensus disorder prediction 316 335 - -
Spst10g01541 335 SUPERFAMILY DNA-binding pseudobarrel domain 9 107 IPR015300 -
Spst10g01541 335 PANTHER B3 DOMAIN-CONTAINING 9 306 - -
Spst10g01541 335 Pfam B3 DNA binding domain 223 300 IPR003340 GO:0003677
Spst10g01541 335 SMART B3_2 11 106 IPR003340 GO:0003677
Spst10g01541 335 SMART B3_2 216 310 IPR003340 GO:0003677
Spst10g01541 335 MobiDBLite consensus disorder prediction 169 191 - -
Spst10g01541 335 ProSiteProfiles B3 DNA-binding domain profile. 215 314 IPR003340 GO:0003677
Spst10g01541 335 SUPERFAMILY DNA-binding pseudobarrel domain 219 313 IPR015300 -
Spst10g01541 335 Gene3D - 6 107 IPR015300 -
Spst10g01541 335 CDD B3_DNA 244 312 IPR003340 GO:0003677
Spst10g01541 335 Gene3D - 203 315 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01541 Spst-Chr10 16039977 16042516 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01541 29 309 B3 DNA Binding Superfamily AT3G18990 25.857 4.23e-21 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst10g01541 B3 8.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01541 - - vun:114191442 267.314