Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01540 ATGCCTTCTGATCGACACTGTGGCTTTTACTTTGCCAAGAAGATTGAGGAATACACCCTTCAAAGTGGGGAACTGAGGATTCCTCGAAGGATTGTGAGCAGATGGTGGGAAGGAATGTCCAACCCTGTACTCTTTGTGCTCCCGAACGGTGATAAATGGGAAATGAAATGGAAAAAAAGTAAGGCTGATCTTTGGTTGGTTGATGATTGGAAGAAATTTGCAGAATTTTATTCTTTGGATCTAGAGCATCAGTTAGTGTGCAAATATTTGGGAAAGTCACAGTTGGAGGTTGCAATACTTGATCAAAGTGGCGGGGAAATTTTTTACCCTTTGAGGGAAGGAGCTTCAGATGGTGAAGGGAATATTATGTGCCAGATTAAGAGGGGAAAATCTCCCTTACAACTTTCTCTTTCTTCCAAGAAGATGAAAACCATCCCAAAAACGGAACCTAGTTGCAGCCAAGAAGTTAAAACTAACCGTGAGATTAATATAATAAGGATCACACGTGGAAGTAGTAGTAGTAGTAGCTGCTCAAAATCTATGACCAATGCTGTTCAAAGTGAGGGACAAAGTGCTTTAGAGAGAGCACAGGCTTTCCGCTCTCATAATCCTTTCTTCATTCGTGAAATGAAACCATCATACATTAACATACTGCTGGTCATACCAACCAGTTTTGGTACTGACCACGTAGGAATTGATGGTAAAAGCATTGCTATTGGGACCTCTGACTCTGGGGACAAAACCTGGCTTGTGAAGTTTTGTGTGAATAGTAGCAATGGACAATCAGTACTCACTACTGGTTGGAGGAAGTTTGTGAAGGAGAATAACTTGAAAGTAGGGGATGTTTGTGTTTTTGAGCAAATTAAGTCACCAGCATTTTCATTGAGAGTTCATATTTTCCGTCATGGAGAAGAAACAAATCCTACCAATTTTTCAGATTTGTCAACTCCTAAAAACATTCTGAACTTGTGTTTGGAAGACTTGGCCAACTACTTTGATCTTATTCCTTTGAAGTAA 1017 0.4012 MPSDRHCGFYFAKKIEEYTLQSGELRIPRRIVSRWWEGMSNPVLFVLPNGDKWEMKWKKSKADLWLVDDWKKFAEFYSLDLEHQLVCKYLGKSQLEVAILDQSGGEIFYPLREGASDGEGNIMCQIKRGKSPLQLSLSSKKMKTIPKTEPSCSQEVKTNREINIIRITRGSSSSSSCSKSMTNAVQSEGQSALERAQAFRSHNPFFIREMKPSYINILLVIPTSFGTDHVGIDGKSIAIGTSDSGDKTWLVKFCVNSSNGQSVLTTGWRKFVKENNLKVGDVCVFEQIKSPAFSLRVHIFRHGEETNPTNFSDLSTPKNILNLCLEDLANYFDLIPLK 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01540 338 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 31 308 IPR044837 -
Spst10g01540 338 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Spst10g01540 338 Pfam B3 DNA binding domain 206 302 IPR003340 GO:0003677
Spst10g01540 338 Gene3D - 184 304 IPR015300 -
Spst10g01540 338 CDD B3_DNA 204 301 IPR003340 GO:0003677
Spst10g01540 338 ProSiteProfiles B3 DNA-binding domain profile. 219 303 IPR003340 GO:0003677
Spst10g01540 338 SMART B3_2 206 303 IPR003340 GO:0003677
Spst10g01540 338 SMART B3_2 11 103 IPR003340 GO:0003677
Spst10g01540 338 Gene3D - 8 104 IPR015300 -
Spst10g01540 338 SUPERFAMILY DNA-binding pseudobarrel domain 199 302 IPR015300 -
Spst10g01540 338 SUPERFAMILY DNA-binding pseudobarrel domain 9 103 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01540 Spst-Chr10 16021355 16027259 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01540 10 301 B3 DNA Binding Superfamily AT3G18990 27.219 5.37e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst10g01540 B3 4e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01540 - - vun:114191440 252.292