Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01538 ATGGCTGCTCATTGTCAAGGAGGAAGTGATATTCTGCCTATCCATTTCTTCAAGACCATTCTTGAAACTAATCTTCAAAGGCTTAAATTACCCAACAAGTTTGTAATGAGATATGGAGGTGAATTGCCAAATCCAGTGTTTATGAAGCCTATGGATGGCACTGAATGGGAAGTGTACTGGGCAAATCATAATGGCGAGATCTGGTTTGAGAAAGGGTGGAAAGATTTTGCTGAGTATTATTCCCTAGATCAAGGACATTTCATTTTCTTTAAATATGAAGGAACTTCCCATATTGAAGTACTCATACATGACCAAAGTGCTCTAGAAATAGCTTATCCTTCTGCTAGCACTCGTGATGAAAAGGACACTCCAGACAACAACAGTGAGGATGAGTGTCCAGATCAAAAGGCTACACAAATAGCAGGTGAGAAGGGCACTCGAAAAAAATCGTTGAACTGGCCACTAGAACCTAGAGCACAGGAAGTAGCAAGCAATTTCATGTCACGCAATCCGTTTTTCACAGTTTTCTTGAAGCCTTTACATGTGACAGGATACCAGCTGCATGTACCATATTTGAAAGACATTATTGATATGAAGGAAAAGTATGTGGTGGCGCTGCAGCTTGGGAAAAGATCATGGAATGTAAAGTTGATCCCTTATCACGACTTTCGTGCACACAAGTTCTCTGGTGGCTGGTCCTTATTTGCAAAGGAAAATAAATTGCAACCTGGAGATGTTTGTGTATTTGAACTGATTAACATGGAGGATTTAGTTTTTAAAGTTCATGTTTTCAAACAGCAGAGCTAA 807 0.3978 MAAHCQGGSDILPIHFFKTILETNLQRLKLPNKFVMRYGGELPNPVFMKPMDGTEWEVYWANHNGEIWFEKGWKDFAEYYSLDQGHFIFFKYEGTSHIEVLIHDQSALEIAYPSASTRDEKDTPDNNSEDECPDQKATQIAGEKGTRKKSLNWPLEPRAQEVASNFMSRNPFFTVFLKPLHVTGYQLHVPYLKDIIDMKEKYVVALQLGKRSWNVKLIPYHDFRAHKFSGGWSLFAKENKLQPGDVCVFELINMEDLVFKVHVFKQQS 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01538 268 MobiDBLite consensus disorder prediction 115 132 - -
Spst10g01538 268 Pfam B3 DNA binding domain 191 266 IPR003340 GO:0003677
Spst10g01538 268 Pfam B3 DNA binding domain 21 103 IPR003340 GO:0003677
Spst10g01538 268 Gene3D - 156 267 IPR015300 -
Spst10g01538 268 SUPERFAMILY DNA-binding pseudobarrel domain 14 113 IPR015300 -
Spst10g01538 268 PANTHER B3 DOMAIN-CONTAINING 13 262 - -
Spst10g01538 268 SUPERFAMILY DNA-binding pseudobarrel domain 168 265 IPR015300 -
Spst10g01538 268 SMART B3_2 172 267 IPR003340 GO:0003677
Spst10g01538 268 SMART B3_2 16 106 IPR003340 GO:0003677
Spst10g01538 268 MobiDBLite consensus disorder prediction 114 149 - -
Spst10g01538 268 CDD B3_DNA 15 104 IPR003340 GO:0003677
Spst10g01538 268 Gene3D - 12 107 IPR015300 -
Spst10g01538 268 CDD B3_DNA 171 265 IPR003340 GO:0003677
Spst10g01538 268 ProSiteProfiles B3 DNA-binding domain profile. 211 267 IPR003340 GO:0003677
Spst10g01538 268 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01538 Spst-Chr10 16004216 16005495 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01538 12 265 B3 DNA Binding Superfamily AT3G18990 28.070 4.17e-29 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst10g01538 B3 4e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01538 - - ccaj:109795878 332.028