Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01519 ATGGTAACAGATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAGCAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTACACAGAAGAGGACACAACTTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCCGAACCCACATGCGTCCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACAGGGATTAAGAAACACTACTCTCGCAAACATGGCGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAGTATGCTGTTCAATCAGATTGGAAAGCCCATTCTAAGACTTGTGGCACCAAAGAATACAGATGTGACTGTGGCACCCTCTTCTCCAGGAGAGACAGTTTCATCACCCACAGGGCCTTCTGTGATGCACTTGCTCAAGAGAGTGCAAGACAGCCACCAAACCTTAGTGCCGCCATTGGAACCCACATCTTCGGAACCACCACCAACACCATCCCCTTGAACCTTTCTCAGGTTGCTTCTCACATATCCAGCATCCAAGACACCAACACCCAACCACCTGAACTCCTCCGCCTCGGTGGTGCTGCCGCTGCGACCAGAACTACCCAATTCGACCACCTCCTAGGTTCTCCCTTCAGACCCTCCCAACAACAGCAACCCTTCTTCATCGAACCTAACCACAGCTATCACCCCGACCAACACCAACAACAAGGTTTGCTCCAAAACAAGCCCTTCCAACAAGGACTAATGCAACTGTCTGATCATCTCAACAACAACAACTCACCCTTCAACCTTCCCTTCCTTTCAAACACCACCACCAATGCTTCATTCTCTGAAAACTTCAACAATGCCAACAACACAAACGAGGGCACCAACTTCTTCACAACTTCAAGCGCTCCTTCGCTCTTCAGCAGCAGCAACAATGCTGTCAGTGCCAACGCCAATGCACTATCTCACATGTCTGCAACTGCACTGCTTCAGAAAGCTGCACAAATGGGTGCAACTTCGAGCAACAGCACCGCTTCGCTATTGAAAAGTTTCGGAAGCGCGTCCTCCAGCAGCGGCTCAAAATCCGAGCAACACAGGCCACTGGTAAATGCTGCAAACTACGGTGGTGGAATCTTCGGAGGAAACGTGAACGAACAGAGTAACAGCAACCTACAAGACCTGATGAACTCGTTCGCTGTTAGTGGAAACTCTTCCATTTTCGAAGGTGGGTTTGAAGCATATGATCATAACAGTAATAATAACAACAGGGAGGGGAAAGTGCACGCAATGAGTGGAAGCAGCAGCATTGGAGGGTCTGATAGACTCACCCGCGATTTTCTGGGTGTGGGTCAGATAGTGAGAGGCATGAATGGAAGTGGAAGTGTTGCACAGAGAGAACAACAACATGGCTTCAACCTGAGTTCTCTGGAAGCAGATCAAAGAAACAACAATAACAGCAATAACAACAGTAACAATAATGCTGCGCCGTCAGGCCTAGCTTTTGGAGGTGGTGGAGGGAATTTTCAGTGA 1554 0.4871 MVTDPDAEVIALSPKTLMATNRFICEVCSKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTKEYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPNLSAAIGTHIFGTTTNTIPLNLSQVASHISSIQDTNTQPPELLRLGGAAAATRTTQFDHLLGSPFRPSQQQQPFFIEPNHSYHPDQHQQQGLLQNKPFQQGLMQLSDHLNNNNSPFNLPFLSNTTTNASFSENFNNANNTNEGTNFFTTSSAPSLFSSSNNAVSANANALSHMSATALLQKAAQMGATSSNSTASLLKSFGSASSSSGSKSEQHRPLVNAANYGGGIFGGNVNEQSNSNLQDLMNSFAVSGNSSIFEGGFEAYDHNSNNNNREGKVHAMSGSSSIGGSDRLTRDFLGVGQIVRGMNGSGSVAQREQQHGFNLSSLEADQRNNNNSNNNSNNNAAPSGLAFGGGGGNFQ 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01519 517 MobiDBLite consensus disorder prediction 486 505 - -
Spst10g01519 517 Gene3D Classic Zinc Finger 77 156 - -
Spst10g01519 517 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
Spst10g01519 517 MobiDBLite consensus disorder prediction 486 517 - -
Spst10g01519 517 SMART c2h2final6 99 119 IPR013087 -
Spst10g01519 517 SMART c2h2final6 64 94 IPR013087 -
Spst10g01519 517 SMART c2h2final6 23 45 IPR013087 -
Spst10g01519 517 SUPERFAMILY beta-beta-alpha zinc fingers 22 119 IPR036236 -
Spst10g01519 517 FunFam protein indeterminate-domain 12-like 2 70 - -
Spst10g01519 517 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 45 IPR013087 -
Spst10g01519 517 FunFam protein indeterminate-domain 5, chloroplastic-like 77 156 - -
Spst10g01519 517 Gene3D Classic Zinc Finger 3 71 - -
Spst10g01519 517 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 482 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01519 Spst-Chr10 15846384 15850242 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01519 6 468 IDZ Gene Family AT2G02070 48.889 1.57e-128 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst10g01519 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01519 K25870 - gmx:100786121 674.085