Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01504 ATGTCGTTGTTTCCCGCCAAAAGGAAAAACAATCGTTTGAGGTTCCCGCTCTGTTGCTTTTTATGCGCATTCTCCGTATCAAACTACGCAATCGCAAACGCGCGAAGGGTTTCTTTCCAACAATTCCAAGGCATGGACATGTCAAATCCTGCTGTATTTGTAAATGCTCAGTTGATTCCCAACTTTACAGGGAAGAAAGTAAGAATAGTGGTTCAGGTGAATCAATGTGATGGCGGGGTTGCCACAGCAAAATCCACTGATGACTCTCAATTAATAATAAAAGGGTTACCACAAGTTCCCATTATGAATTTTATTGAGGTCATTGGTATTGCTGAAAGCAGCAACTCCATTGATGCCGAAATATGGACTGACTTTGGCAACACATTTGATACCAACTCTTACAATCAGCTGTGCCAACTAGCAAATGGTGAATTCAAAGGTCTGTTTCTCTAG 453 0.415 MSLFPAKRKNNRLRFPLCCFLCAFSVSNYAIANARRVSFQQFQGMDMSNPAVFVNAQLIPNFTGKKVRIVVQVNQCDGGVATAKSTDDSQLIIKGLPQVPIMNFIEVIGIAESSNSIDAEIWTDFGNTFDTNSYNQLCQLANGEFKGLFL 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01504 150 CDD RPA3 50 149 - -
Spst10g01504 150 Gene3D - 47 150 IPR012340 -
Spst10g01504 150 SUPERFAMILY Nucleic acid-binding proteins 47 149 IPR012340 -
Spst10g01504 150 Pfam Replication factor A protein 3 47 143 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Spst10g01504 150 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 42 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01504 Spst-Chr10 15714101 15715285 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01504 45 150 Core DNA Replication Machinery Family AT4G18590 54.717 3.81e-42 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01504 K10740 - gmx:100781484 194.126