Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01501 ATGATAATAAATGATGATTTCAGGTTACGAAGTCCAAAAACAGAGTCCACCCGACAGAGGTTCCGAGGAGTCTTGAAAATTATTCTCCAACTTCAAATTTCTCTCATGGATACTCATCCTGGTCAGAGTTGCGCAACCCTGCCAATCAATTTCTTCAAGATTATTATTGAAACTAATGTTGAAAGGATAAAACTACCCAACAAGTTTACAAGGAGATATGGGGGTGGTTTGTCAAATCCAGTGTCCCTTAAGTCTCCCGATATCAAGGAATGGGTAGTTCATTGGACAAAAGAGAATGGTGATATTTGGTTAGAAAAGGGTTGGAAAGAGTTTGTTGAAAACTATTCCTTAGTTCGGGGGCATTTGGTATTGTTCAAGTACGCAGGAACTTCCAATATAGATGTACTCATACTTGATCAGAGTGGCCTAGAATTAGATTATTCTTCTTCTGAATCAGTTAGACAAAGAAACGTGGAAAGAGACCCCAATGTGCTAAAATTGCTTGCAGTTGAGGGTATTTGTTCTGATCAAAGGGCCATTGTTTCAAAAACAATCAAGCAGAAACCAGAAGATGTGAATCCTACTCAAAGTGGAACATGTTTGAATATGCCGCCGTTGAAAAGAGCTCAACAAATAACAACAAAATTCAAATCAAGCCATGTTTATTTCACTCTTGTGATAAGGAAGTCCAAGTTTGAGAAATATGCTGCGACACATGTGCCCAGGTTTTTGGATTGTGTGAACGGGAAGCAGGACGTGATGCTGAAGATGGGCGACAAGTTGTGGTGTGTGAACTTAGTCCGTGGTCGTGATAAGCGATATGATCGATTCTGTTCTGGTTGGTCTATTTTTGCACAAGAGAGCAAATTGGAATCTGGTGACGTTTGTATCTTTGAGTTGATTAAACCCGAAGTTCCACTGCTTCAAGTTCATGTTTTCAAACGCTAG 948 0.3977 MIINDDFRLRSPKTESTRQRFRGVLKIILQLQISLMDTHPGQSCATLPINFFKIIIETNVERIKLPNKFTRRYGGGLSNPVSLKSPDIKEWVVHWTKENGDIWLEKGWKEFVENYSLVRGHLVLFKYAGTSNIDVLILDQSGLELDYSSSESVRQRNVERDPNVLKLLAVEGICSDQRAIVSKTIKQKPEDVNPTQSGTCLNMPPLKRAQQITTKFKSSHVYFTLVIRKSKFEKYAATHVPRFLDCVNGKQDVMLKMGDKLWCVNLVRGRDKRYDRFCSGWSIFAQESKLESGDVCIFELIKPEVPLLQVHVFKR 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01501 315 ProSiteProfiles B3 DNA-binding domain profile. 223 315 IPR003340 GO:0003677
Spst10g01501 315 Gene3D - 206 315 IPR015300 -
Spst10g01501 315 Gene3D - 47 142 IPR015300 -
Spst10g01501 315 ProSiteProfiles B3 DNA-binding domain profile. 48 141 IPR003340 GO:0003677
Spst10g01501 315 CDD B3_DNA 51 139 IPR003340 GO:0003677
Spst10g01501 315 CDD B3_DNA 212 314 IPR003340 GO:0003677
Spst10g01501 315 Pfam B3 DNA binding domain 59 132 IPR003340 GO:0003677
Spst10g01501 315 SUPERFAMILY DNA-binding pseudobarrel domain 50 148 IPR015300 -
Spst10g01501 315 SMART B3_2 51 141 IPR003340 GO:0003677
Spst10g01501 315 SMART B3_2 212 314 IPR003340 GO:0003677
Spst10g01501 315 SUPERFAMILY DNA-binding pseudobarrel domain 217 314 IPR015300 -
Spst10g01501 315 PANTHER B3 DOMAIN-CONTAINING 49 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01501 Spst-Chr10 15694670 15696385 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01501 207 314 B3 DNA Binding Superfamily AT3G18990 27.826 4.02e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst10g01501 B3 6.7e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01501 - - vun:114192490 330.487