Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01490 ATGCTCCCCATCACCTGCATTCTTTTAATGTGCCTTCTAAGCTCTTTCTCTCCCCCAATCCAAGCTCTCCTCAACCTCACCGTACTACCCCACCAGCACCCTCACCCCGAATCCATTGTCCACGAAGTTCAACGGAAGGTGAATGCCTCGTTATGGAGAAGGCAAATGCTGTCCAAAGACCAACAAGCCACGTGTGTCACCGGGAACCCAATAGACGACTGCTGGCGGTGCGACCCCAACTGGGCTGCGAACCGGCAGAAGCTGGCGGACTGCGGCATCGGGTTCGGCAAAGACGCCATGGGCGGGAAGGGCGGGCAGATCTACGTGGTGACGGACTCGTCGGACCGCGACCCAGCAAACCCCGTCCCCGGCACGCTCCGGCACGCCGTCATTCAAGACGAGCCTCTCTGGATAGTGTTCGCCGCCGACATGACCATAAACCTAAAACACGAGCTCATCTTCAACAGCTTCAAAACCGTGGACGGGCGCGGCGCCAACGTCCACGTCACCGGCCACGGCTGCATCACGCTCCAGTACATCTCCGACGTCATCATCCACAACATCCACGTCCACCACTGCACGCCCTCGGGGAACACCAACATACGCGCCAGTCCAACGCACGTGGGGTGGAGGGGCAGATCGGACGGCGACGGCATCTCCATCTTCAGCGCCCGGAAGATCTGGATCGACCATTGCTCCCTCTCTTACTGCACGGACGGCTTGATCGACGCCATAATGGGCTCCACCGCCATTACTATTTCGAACAACCACTTCGCCCACCACGATGAGGTCATGCTTTTGGGACACAACGATAAGTACTCTCCCGATCGAGGCATGCAGGTTACCATTGCGTTCAATCACTTCGGCGAGGGTTTGGTGCAGCGCATGCCACGTTGCAGGCTCGGTTACATCCACGTCGTCAACAACGACTTCACGCAGTGGCAGATGTACGCTATCGGCGGTAGCGCTAACCCCACCATCAACAGCCAGGGCAACCGTTACACCGCCCCGTCCGACCCTGATGCCAAAGAGGTGACGAAGCGCGTGGACACAGACGACAGTGAGTGGAGTGGTTGGAATTGGAGAACGGAAGGGGACATAATGGTAAATGGAGCATTCTTTGTACCGTCGGGTGCAGGGCTGAGTGCGCAGTACGCGGAGGCCACCAGTGTGCAACCCAAATCCGCCGTGCAAATTGACCAGCTCACCATGTATTCCGGTGTCTTCGGTGATCCCAGGGATAATGGAGATCTGTATCCCGGTTTCAACGGTGGTGGGACCGTGACCGGAGCCACCAGCAAAGGCAACAGTGCGGGGTCCAGCGGTGACGATGGAGACTTCTTCGGGATGATATTCAGAGGTAGCAGCAGCCATGCAGCGCCACCATCATCACCCTCTTCGTCCATTGTATTTGTTACGACCTTTTTGTCTCTTCTAATTATTCTCATTTTGGACACTTCCACCAACCATCCCATTCTATGA 1482 0.5695 MLPITCILLMCLLSSFSPPIQALLNLTVLPHQHPHPESIVHEVQRKVNASLWRRQMLSKDQQATCVTGNPIDDCWRCDPNWAANRQKLADCGIGFGKDAMGGKGGQIYVVTDSSDRDPANPVPGTLRHAVIQDEPLWIVFAADMTINLKHELIFNSFKTVDGRGANVHVTGHGCITLQYISDVIIHNIHVHHCTPSGNTNIRASPTHVGWRGRSDGDGISIFSARKIWIDHCSLSYCTDGLIDAIMGSTAITISNNHFAHHDEVMLLGHNDKYSPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWQMYAIGGSANPTINSQGNRYTAPSDPDAKEVTKRVDTDDSEWSGWNWRTEGDIMVNGAFFVPSGAGLSAQYAEATSVQPKSAVQIDQLTMYSGVFGDPRDNGDLYPGFNGGGTVTGATSKGNSAGSSGDDGDFFGMIFRGSSSHAAPPSSPSSSIVFVTTFLSLLIILILDTSTNHPIL 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01490 493 MobiDBLite consensus disorder prediction 328 356 - -
Spst10g01490 493 Gene3D - 68 410 IPR012334 -
Spst10g01490 493 SMART amb_all 143 340 IPR002022 -
Spst10g01490 493 PRINTS Pollen allergen Amb family signature 388 411 IPR018082 -
Spst10g01490 493 PRINTS Pollen allergen Amb family signature 115 140 IPR018082 -
Spst10g01490 493 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Spst10g01490 493 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Spst10g01490 493 PRINTS Pollen allergen Amb family signature 91 108 IPR018082 -
Spst10g01490 493 PRINTS Pollen allergen Amb family signature 151 167 IPR018082 -
Spst10g01490 493 PRINTS Pollen allergen Amb family signature 359 383 IPR018082 -
Spst10g01490 493 PRINTS Pollen allergen Amb family signature 215 236 IPR018082 -
Spst10g01490 493 Pfam Pectate lyase 151 332 IPR002022 -
Spst10g01490 493 SUPERFAMILY Pectin lyase-like 47 384 IPR011050 -
Spst10g01490 493 PANTHER PECTATE LYASE 18-RELATED 32 409 IPR045032 GO:0030570
Spst10g01490 493 MobiDBLite consensus disorder prediction 340 356 - -
Spst10g01490 493 FunFam Pectate lyase 68 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01490 Spst-Chr10 15549203 15553958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01490 1 486 Polysaccharide Lyase AT3G53190 62.525 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01490 K01728 - gmx:100808438 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01490 10 15549203 15553958 Spst10g01490 10 15549203 15553958 ECH