Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01484 ATGGCTGGGAAGGAAGATAATCGAATATTTGTGGGAGGTTTATCTTGGGACGTCACGGAGCGTCAACTCGAGCATGCCTTTGCTCGTTACGGCAAAATTCTCGAATGCCAGATTATGATGGAAAGGGATACAGGCCGTCCCCGTGGATTTGGGTTTATCACATTTACAGACCGTAGGGGAATGGAGGATGCAATTAAGGAAATGCATGGACGGGAAATTGGTGATCGCATCATCTCTGTCAACAAGGCACAGCCTAAGATTGGGGGTGAAGATGTAGATCAAGGTTATAGAGGCAGCTATTCATCAGGTGGTAGGGGAAGCTATGGTGCTGGAGATAGGTTAGGGCAGGATGACTGCTTCAAATGTGGGCGTCCAGGACACTGGGCCCGAGATTGTCCTTTGGCAGGAGGTGGTCGTGGTCGTGGTGGTAGTTCATTTTCTTCACGTCCTAGGTTTGTAGCTGCTGGTGGACATGGGGATCGCCTTGCTGGTGAACGTGATCGATATGTGGATGATCGTTACGATGGAGGACGCTATGGAGATAGGGATCGTTTTGACAATCGTGACTACAAATATGGCAGCCGTGATCGCTATACCAGTGACAGGTATCCAACCAGTGCTGATCGATTTGCAAGCGATCGATATGGCGGTGGCTCAGATCATTACCCACAAAATGGTTATGGAAAGGAAAGAGGGTATGACCGATACGGTGGTCCACGAGGTGGTGCTGACAGGTATGGAAGTGGAATGGCAGGTCGAGATGAAGGAAGGAGTTATAGGGGCAGACCTGGTCCATATGACCGCCCAAGCAGGGGTTCTCGTCCATCACTGGACCGTTACTGA 843 0.503 MAGKEDNRIFVGGLSWDVTERQLEHAFARYGKILECQIMMERDTGRPRGFGFITFTDRRGMEDAIKEMHGREIGDRIISVNKAQPKIGGEDVDQGYRGSYSSGGRGSYGAGDRLGQDDCFKCGRPGHWARDCPLAGGGRGRGGSSFSSRPRFVAAGGHGDRLAGERDRYVDDRYDGGRYGDRDRFDNRDYKYGSRDRYTSDRYPTSADRFASDRYGGGSDHYPQNGYGKERGYDRYGGPRGGADRYGSGMAGRDEGRSYRGRPGPYDRPSRGSRPSLDRY 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01484 280 SUPERFAMILY RNA-binding domain, RBD 4 111 IPR035979 GO:0003676
Spst10g01484 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Spst10g01484 280 ProSiteProfiles Zinc finger CCHC-type profile. 119 133 IPR001878 GO:0003676|GO:0008270
Spst10g01484 280 SMART rrm1_1 8 81 IPR000504 GO:0003723
Spst10g01484 280 Gene3D - 1 114 IPR012677 -
Spst10g01484 280 MobiDBLite consensus disorder prediction 160 203 - -
Spst10g01484 280 SUPERFAMILY Retrovirus zinc finger-like domains 102 138 IPR036875 GO:0003676|GO:0008270
Spst10g01484 280 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Spst10g01484 280 Gene3D - 115 142 - -
Spst10g01484 280 PANTHER SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL 4 273 - -
Spst10g01484 280 FunFam glycine-rich RNA-binding protein RZ1C 1 114 - -
Spst10g01484 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Spst10g01484 280 MobiDBLite consensus disorder prediction 134 280 - -
Spst10g01484 280 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01484 Spst-Chr10 15470233 15474891 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01484 9 88 C2H2 Transcription Factor Family AT2G19380 43.750 6.96e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01484 - - gmx:100809519 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01484 10 15470233 15474891 Spst10g01484 10 15470233 15474891 ECH