Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01453 ATGGGACCGCGGAACAAAACCCATGCTCATCCACACGGAAAGTGGGTCACCACGGAAATCGCTCTGATTAGAGAGTCGGCCAATGAGAAAGCAGAGAATAGGATTAACTTTCCAAGCTCCTCCAATGAAAAACCAGATAAGGCGTTCCACTGTGGAGCCCAAAGTTCAATCCCTTTCACTGCTCAGGGTCCCAAAAGTGCAAATCCAAACAATCTCTCCCTGTTAAATGGACTGCAAAAGCGCCTCTTTACTGCTAAGAACGGGGAATACGCTGCTGTTGGGGGCAAAACGGCAAGAGCATGTGATAGCTGCATAACGAAACGGGCACGTTGGTACTGTGCTGCCGACGACGCTTTCCTCTGCCAAGCTTGTGACTCTTCGGTTCACTCTGCTAATCCCTTGGCCCGCAGACACGAACGAGTCCGCTTGAAAACGGCGTCGTACAAGTCCACCGACGAACAGCAGCAACAACCTCCCACTTGGCACACTAAGAAAGCTCGAACGCCCAGACATGGGAAACACTCTCGAATCAACAACCCCTTTCATTTGGTCCCTGAAGTCGGTTCGGAAGAGGCGAATTCCCATGACGAGAACGAGGATCAGCTTCTTTATAGGGTCCCCATATTCGACCCTTTTGTTGCTGAGCCTTGTGGGACTAATAGTTCTTCTCCTTCTTCGGTAACTTCAACTGATCAAGGAGTGGCAGCTGCTGTCACCGAGGCTGAAAACAAAGGGGTTCGTAGCAATGTTTTTTATCACAGTAATAATGAGATGGAAAACTTGCATGGGATTCTTCCTTCCGATGCAGAACTTGCTGAGTTTGCTGCTGACGTTGAGAGTTTATTGGGTAGGGGGCTTGAAAACCAGTGTGTGGGGATAGAGGATTTGGGACTCATGGATGCGAAGGAGGAGGAGTGTTCCGTGGGTAGTGGAAAGGTGAAGGTGGAGGAGGAAGAGAGCCCTGAGATGGAGATGGAGATGGTGGGAAGAGATCTATCGTTTGAATTGAGCTTTGACTATGACACGTGTGACGAGGTGAAGGAGAAGGTTTGTGATTTGGAATTGGAACTGGGCAAGGATAAGGGGAATGAAGAAGAAGAACTGGGAGAGAATGTTGAGGGGAAAAGGAAGAAGATTTCGTTGCAGCTGGATTACGAGGCGGTGATTATTGCCTGGGCTAGCCAAAAGTCTCCGTGGACCACTGCTCACAAACCAAAGTTGGACCCCGATGAGTGCTGGCACCAATGCATGGAAACTTATGGAACAGCGATTCATCATCCTTATGGTGAAGTGGGTGGATTTGGGATTCATCCAGTGATAATAGACGGAGGCAGAGAGGCAAGAGTGTCAAGGTACAGAGAAAAGCGCCGAACAAGGTTGTTCTCGAAGAAAATAAGGTACGAGGTTAGAAAATTGAATGCAGAGAAGAGACCCAGAATGAAGGGGAGGTTTGTGAAGAGGGCTTCCTTCGCAGCACCGACATTTCCTTTGCTAAATAAATAG 1503 0.4877 MGPRNKTHAHPHGKWVTTEIALIRESANEKAENRINFPSSSNEKPDKAFHCGAQSSIPFTAQGPKSANPNNLSLLNGLQKRLFTAKNGEYAAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANPLARRHERVRLKTASYKSTDEQQQQPPTWHTKKARTPRHGKHSRINNPFHLVPEVGSEEANSHDENEDQLLYRVPIFDPFVAEPCGTNSSSPSSVTSTDQGVAAAVTEAENKGVRSNVFYHSNNEMENLHGILPSDAELAEFAADVESLLGRGLENQCVGIEDLGLMDAKEEECSVGSGKVKVEEEESPEMEMEMVGRDLSFELSFDYDTCDEVKEKVCDLELELGKDKGNEEEELGENVEGKRKKISLQLDYEAVIIAWASQKSPWTTAHKPKLDPDECWHQCMETYGTAIHHPYGEVGGFGIHPVIIDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAAPTFPLLNK 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01453 500 ProSiteProfiles Zinc finger B-box type profile. 96 143 IPR000315 GO:0008270
Spst10g01453 500 ProSiteProfiles CCT domain profile. 445 487 IPR010402 GO:0005515
Spst10g01453 500 SMART bboxneu5 96 143 IPR000315 GO:0008270
Spst10g01453 500 MobiDBLite consensus disorder prediction 148 163 - -
Spst10g01453 500 Pfam CCT motif 445 487 IPR010402 GO:0005515
Spst10g01453 500 MobiDBLite consensus disorder prediction 146 178 - -
Spst10g01453 500 Pfam B-box zinc finger 98 141 IPR000315 GO:0008270
Spst10g01453 500 CDD Bbox1_BBX-like 100 143 - -
Spst10g01453 500 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 92 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01453 Spst-Chr10 15087958 15089833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01453 92 487 C2C2-CO-like Transcription Factor Family AT1G25440 45.952 2.49e-98 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Spst10g01453 zf-B_box 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01453 - - vun:114190512 787.719