Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01432 ATGTCCACAATTGCAAAGAGAGATTTGAGTTCTAATGAGGAGGAGAATGAGCTGAGAAGAGGACCTTGGACTCTTGAAGAAGACAGCCTACTCATTCACTATATTGCTCGTCATGGAGAAGGTCGATGGAATATGTTGGCAAAGAGTGCAGGATTGAAGAGGACTGGAAAAAGCTGCAGACTCAGATGGCTGAATTATTTGAAACCAGACATTAAGAGAGGGAACCTCACTCCACAGGAGCAACTCTTGATCCTTGAACTCCATTCCAAGTGGGGTAACAGGTGGTCAAAAATTGCTCAGCATCTGCCAGGAAGAACAGACAATGAGATCAAGAATTATTGGAGAACAAGGGTACAGAAGCAGGCACGCCAACTTAACATTGAGTCTGGAAGCAAGAGATTCATTGATGCTGTCAAGTGTTTTTGGATGCCAAGGTTGCTCCAAAAGATGGAACAGAACAATTCTCCAAGCCCTCACTCTTCCATGACAAACATGGTGAATTTAGGGAATTCTGGAGAAGCTTCTATGAGTTCAATGTCAAGCAACTTCAATATTCCCTCTATGTCTTCATCATCTCCTCCAGAGAGGGAATTCATTATGGATGGTGCAAATCATTTTAGTACCATGTCCAACCCCATCAATCCATCCCCAGATTCCTACCCATTTTCACAACTACTTGAAATTTCTGAACACCCCAAAAGTCCTCTCAATGTGCTTGAGAACAACGTTTACAGTTATCCAATCCAGGACAATTGCTGTGCTTTTACCAGTAACTATGGCATGGAAGGACTAAACATGGATCCCCTTTCAGCCATGGGAACTTATGACTTCCCACAGTTTGATTTTCAGACTGCAGGGAATGGATGGATGTTAGACAGCGTGGAGGATACTACTTTATGGAACATGGATGCTATGTGA 918 0.4303 MSTIAKRDLSSNEEENELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQNNSPSPHSSMTNMVNLGNSGEASMSSMSSNFNIPSMSSSSPPEREFIMDGANHFSTMSNPINPSPDSYPFSQLLEISEHPKSPLNVLENNVYSYPIQDNCCAFTSNYGMEGLNMDPLSAMGTYDFPQFDFQTAGNGWMLDSVEDTTLWNMDAM 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01432 305 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Spst10g01432 305 Gene3D - 17 73 - -
Spst10g01432 305 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 35 44 IPR001345 GO:0003824
Spst10g01432 305 FunFam Myb transcription factor 20 72 - -
Spst10g01432 305 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Spst10g01432 305 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Spst10g01432 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Spst10g01432 305 SMART sant 19 69 IPR001005 -
Spst10g01432 305 SMART sant 72 120 IPR001005 -
Spst10g01432 305 CDD SANT 77 116 IPR001005 -
Spst10g01432 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Spst10g01432 305 CDD SANT 22 67 IPR001005 -
Spst10g01432 305 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Spst10g01432 305 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 14 189 IPR044676 GO:0003700|GO:0006355|GO:0043565
Spst10g01432 305 FunFam MYB transcription factor 77 140 - -
Spst10g01432 305 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Spst10g01432 305 Gene3D - 76 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01432 Spst-Chr10 14842165 14843294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01432 15 157 MYB Transcription Factor Family AT1G68320 82.517 4.48e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst10g01432 Myb_DNA-binding 3.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01432 K09422 - gmx:100780759 555.058