Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01417 ATGTGTCAGTACACCCAAACCACCAATTCCAACCATTGCATTAACACCACACCACTCGTTTCAATTAATCTCTCCATTCATAACAATAACTCCACCCAAATTATTACTCCCATTCCATTACCGTTAAGCCCTTTCATTTTCACATTAATTCCGAATTTAATAAACCCTACACAAGCAAAACACAAACACGCTCCGCTCGCTGCTTTCTCTTCCTATCTCTCTCGTTCGCCCAGAGAAACAATGGCACCAACACTCTCTCACCTCATTGCTTCTGTTCTGCTTTTTCATTTTGTTCTTCTCACGGTTAAGGGTTCCAATAACCCAGATTTTGACGCTCTCGTTGCCTTCAAAACCGCTTCAGACACTTCCCGAAGACTCACAACATGGAACACTAGCAGTACCAGCCCCTGTTCCTGGAGTGGTGTGTCATGCATTCGCGACCGAGTCTCGCGACTCGTTCTCGAAAACCTCGACCTTCAAGGCTCCATTCACCCCTTGACTTCTCTAACTCAGCTCCGAGTTCTCAGTCTCAAAGGAAACCGTTTCTCCGGTCCCGTTCCCAACCTCTCCAACCTTACCGCTCTCAAACTCCTCTTCTTGTCACGCAACTCCTTCTCCGGCGAGTTTCCGGCGACTTTCACGTCGCTCTTTCGCCTCTACCGTCTTGATCTGTCCAACAACAACTTCTCCGGCGAGATTCCGGATACGGTCTCCCACTTGACCCACCTACTAACTCTCCGCCTCGACGGGAACAAGTTCTCCGGTGACATTCCCGACGTCAACCTCCCCAACCTCCAAGAATTCAACGTCTCCGGTAACCGCCTCTCCGGCGAGATACCTAAAGCATTATCAAGCTTTCCCGAATCATCGTTCGGGCAAAACCCGTTTCTCTGCGGTGTCCCAGTTAAAAAATGCGCATCCGACCCGGGCAAACCTGGATCCGAGGGCGCCATTGCTTCACCGTTGTTACCACATAACAATAACAACCCTACAACTACCGTATCATCGTCACCTAGTTCAATGCCAAAAACGTCAACACCAACGTCAAGCAGTAAGAGCCACGAGAAGAGTGCTTCTAAAATAAGCCCGGTGGCGCTTATAGCTATTATAGTAGGTGATGTTTTGGTTCTTGCAATAGTTTCATTGCTTTTGTATTGTTACTTCTGGAGAAACTACAAGTTAAAGGAGGGGAAAGGGTCAAAGCTTTTCGAGAGTGAGAAGATTGTGTATTCGTCGAGTCCGTACCCTGCTCAGGGAGGGTACGAGAGGGGTCGAATGGTGTTCTTTGAGGGTGAGAAAAGGTTTGAACTTGAGGACTTGCTGCGAGCCTCTGCTGAAATGCTTGGAAAGGGAGGGTTTGGGACCGCGTACAAAGCTGTGCTAGATGATGGGAACGTGGTTGCGGTAAAAAGACTGAAGGACGCGCAGATTACAGGGAAGAGGGAGTTCGAGCAACACATGGAGGTGTTGGGAAGGTTAAGGCATCCCAATGTTGTTAGTTTGAGAGCTTACTATTTTGCGCGCGAGGAGAAGTTGCTGGTCTATGATTACATGCCCAATGCCACCTTGTTCTGGCTCCTTCACGGTACTCTAACCTGCCTACGACATTTCATTTCATTTCATTATATTGCATTGAACCTTCACGACTGTTTCTGTTTGTTTGTCATAGGCCACATGGATGAAATAAAACAAAGTTTTCATTTTCTTTTGTTCTTTAGTTGCCCTCAGTTCAATGGTGGATTATCTGCTTTGAAATTAATTTTCTTCGCACTAGGACCATACCCACGGCGTATGGTTACCCTCCCATGTAGGTTAGATGTAGTTGGTTGGGGTGTCCATTTACGAGGCTCCTTCAAATTTTAA 1863 0.4713 MCQYTQTTNSNHCINTTPLVSINLSIHNNNSTQIITPIPLPLSPFIFTLIPNLINPTQAKHKHAPLAAFSSYLSRSPRETMAPTLSHLIASVLLFHFVLLTVKGSNNPDFDALVAFKTASDTSRRLTTWNTSSTSPCSWSGVSCIRDRVSRLVLENLDLQGSIHPLTSLTQLRVLSLKGNRFSGPVPNLSNLTALKLLFLSRNSFSGEFPATFTSLFRLYRLDLSNNNFSGEIPDTVSHLTHLLTLRLDGNKFSGDIPDVNLPNLQEFNVSGNRLSGEIPKALSSFPESSFGQNPFLCGVPVKKCASDPGKPGSEGAIASPLLPHNNNNPTTTVSSSPSSMPKTSTPTSSSKSHEKSASKISPVALIAIIVGDVLVLAIVSLLLYCYFWRNYKLKEGKGSKLFESEKIVYSSSPYPAQGGYERGRMVFFEGEKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAQITGKREFEQHMEVLGRLRHPNVVSLRAYYFAREEKLLVYDYMPNATLFWLLHGTLTCLRHFISFHYIALNLHDCFCLFVIGHMDEIKQSFHFLLFFSCPQFNGGLSALKLIFFALGPYPRRMVTLPCRLDVVGWGVHLRGSFKF 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01417 620 FunFam pollen receptor-like kinase 1 415 517 - -
Spst10g01417 620 SMART serkin_6 442 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g01417 620 MobiDBLite consensus disorder prediction 310 355 - -
Spst10g01417 620 FunFam Leucine-rich repeat receptor-like protein kinase 106 259 - -
Spst10g01417 620 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 93 530 IPR046959 -
Spst10g01417 620 ProSitePatterns Protein kinases ATP-binding region signature. 448 470 IPR017441 GO:0005524
Spst10g01417 620 Gene3D Phosphorylase Kinase; domain 1 422 517 - -
Spst10g01417 620 ProSiteProfiles Protein kinase domain profile. 442 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g01417 620 Pfam Leucine rich repeat 194 253 IPR001611 GO:0005515
Spst10g01417 620 MobiDBLite consensus disorder prediction 321 355 - -
Spst10g01417 620 SUPERFAMILY Protein kinase-like (PK-like) 446 532 IPR011009 -
Spst10g01417 620 SUPERFAMILY L domain-like 118 302 - -
Spst10g01417 620 Gene3D Ribonuclease Inhibitor 168 311 IPR032675 -
Spst10g01417 620 Gene3D Ribonuclease Inhibitor 102 167 IPR032675 -
Spst10g01417 620 Pfam Protein kinase domain 446 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g01417 620 Pfam Leucine rich repeat N-terminal domain 106 144 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01417 Spst-Chr10 14659656 14661518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01417 109 529 Receptor kinase-like Gene Family AT1G68400 62.529 1.05e-165 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Spst10g01417 Pkinase 3.2e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01417 - - vum:124834036 824.698