Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01408 ATGACCAATTCTTTTAAAAACAAATTAGGGCAAGGAGGCTTCGGTAGCGTATATAAAGGGAAGTTACATGATGGACGTGTTGTTGCAGTGAAGATTTTAGGTGAATCAAAAGGCAACGGAGAAGAATTTATCAATGAAGTGGCAAGTATTAGTAGGACCTCACATGTTAACATTGTTAGACTTCTGGGATTTTGTTTTGATAGTTCTAAACGTGCTCTAGTATATGAGTTTATGCCTAATGGATCTCTTGACAAGTTCATATACGAAGAGAAAAATCCATTGCAGATTGCTCATCAATTGGATTGCAAAATGTTGTATAATATTGCAGTTGGCATTGCTCGTGGATTAGAGTATTTACATAGAGGGTGCAACACTAGAATCTTGCATTTTGACATAAAACCTCACAACATATTATTAGATGACGATTTTAGTCCAAAAATTTCGGATTTTGGACTTGCAAAAATATGTCCAAGAAAAGAAAGTGTGGTATCCATCAGTGGTGCTAGAGGAACTGCAGGTTATATTGCTCCAGAAGTTTTTTCCAGGAATTTTGGTGCTGTGTCACTTAAATCAGATGTTTACAGTTATGGAATGATGATCTTAGAAATGGTTGGAAGAAGAAAGAATATTAAGGTTGAAGTCGATCGTTCGAGTGAATTATATTTTCCTTATTGGATTTATGATCGACTTGAATCAAATCAAGATCTTGATTTACAAATTGTAAAAAATGAAAGTGATGACAGAATGATGAGGAAAATGGCCATAAGTAATGCGCATCAAGTATACGACAAAGGAAGGGCTTTCATGAATTTGTTTTTGTACGTGTGGTTGTATTCTGAGAAAGTGTGGTGGAAAATGGAGGAGGATTCTGTTGTCAAGATTAGCATAACAACTTGGAAATTTCTGCAGTTAAAAGGCATTAATCTTTCTCGGTATCTAAGGTGTTTCCCTCTAGCCAAAGCCGAGTCCAAGTCCAAATCAATTAAACAAGTGGTGAGAGAGTGGGAATGTGGTCAACTTTTTCAACTGGTTCCCTTTTTAAAATTGGTAAGTGTCTGTGGAGACGACGAATTCAAAGATAAGTGGCAGAGACAACTAGACATTTCATTTTCACTCAAAGATGTCAGAACCATCCCACTCGATTCCATCTTTCAAGGTCAAACCCGTAGCCGTAGGCGGCCATAA 1185 0.3696 MTNSFKNKLGQGGFGSVYKGKLHDGRVVAVKILGESKGNGEEFINEVASISRTSHVNIVRLLGFCFDSSKRALVYEFMPNGSLDKFIYEEKNPLQIAHQLDCKMLYNIAVGIARGLEYLHRGCNTRILHFDIKPHNILLDDDFSPKISDFGLAKICPRKESVVSISGARGTAGYIAPEVFSRNFGAVSLKSDVYSYGMMILEMVGRRKNIKVEVDRSSELYFPYWIYDRLESNQDLDLQIVKNESDDRMMRKMAISNAHQVYDKGRAFMNLFLYVWLYSEKVWWKMEEDSVVKISITTWKFLQLKGINLSRYLRCFPLAKAESKSKSIKQVVREWECGQLFQLVPFLKLVSVCGDDEFKDKWQRQLDISFSLKDVRTIPLDSIFQGQTRSRRRP 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01408 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Spst10g01408 394 SUPERFAMILY Protein kinase-like (PK-like) 5 228 IPR011009 -
Spst10g01408 394 SMART serkin_6 3 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g01408 394 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Spst10g01408 394 ProSiteProfiles Protein kinase domain profile. 3 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g01408 394 FunFam Os07g0541700 protein 78 171 - -
Spst10g01408 394 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Spst10g01408 394 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 256 IPR045874 GO:0004672
Spst10g01408 394 Pfam Protein kinase domain 6 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g01408 394 Gene3D Transferase(Phosphotransferase) domain 1 78 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01408 Spst-Chr10 14586125 14589494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01408 1 255 Receptor kinase-like Gene Family AT4G18250 58.397 6.70e-103 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Spst10g01408 Pkinase 5.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01408 - - gmx:100778621 442.965