Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01389 ATGAGAACAAGAACTCTTATACGAGCAAGAACCACCGCAATGCAAGCTTACCAACAATGTATAAATGACCTCCTCTCATATGTATTTAATGGCAGCCAACCTCCACCTACAATGGTTAATACTCCTAGTCAACACGGTCTCCCTCGTGCATGTGCTCCTCTACGTGGATTCCCTATCGTTGTGATATTACTTCTATGTTGCAAGGAAGTAGCATGTTTGAGTGAGTTTCGTGTGGATGGGTCTCACCTTGTACAAAGTGTGTTAAGCTATGTGTATAGAATGAAGTTGAAACACAGTGTTTCCCTGAAGGGTGCAACTTTTACTGCTACAAATAATACATCCGCAGCTGCATCAATGATTTGCAATGAAGAAGGCATCATGTTCAAACTGGTCATGGCTAAAACTAATATGCCTGACATGGATATCCTTTCTTTTCTGAATTTAGTACTTGAAAAGGACATTCCTGTCATCTTTATCAACACTGGAGTATTTGATGATGTAAGTAGGAAAGCTTTATCTACAGGACTATGTTATTTCCTTCAGGAGCCAATCACTCCCAATGATCTTAAATATCTATGGCAACATGTGTATCACTCAAGAGCCTCTTCAGCCAGAAACACTCAAAATGCAGGCTTTCAGAGCATTGAGCCCCATGCAGAAGGATTACAGAATACCCAGATGAAACAGTTGACAAACAACGAATGCCAGGTTCTTGGAGCAAAAAGAGGAAGAAACGATGCTGACATAAAAGGAAAGAGAATTGATTGGGACTACACAATGCCAACCACACAGTGCCCGGTTCACCAAGCATATGGAGACATAAACCGTGTTGAAGATATGGGCAAACAGAAAGAAAAGAAAAATGTTGAACAAGAAAAGCCAGATTCATTGAGATCGGCCAAGATGAACTCTAACATCAATGAATATCTCAGAGTTTCTGAGTTAAAAAAACGTTGCACTGTTTGGACTCCTGAGTTGCACCAAGAGTTTTTAAAGGCCGTGCAAGAACTAGGAGAGAACAATGCTCGTCCAAAACAGATATTAGTTCAGATGAATCTCAACGGGCCTTATTACCTCACTGTTCGCCAGGTTGCAAGTCATCTGCAGAAATACAGATTGCGGTTGAAAGGTGAAGAGAAGTCTCGCAATTCGAATTTGCCTACAGTAAGAACATCATCATCCTCAATGCAAAAAGCCAACTATTCCCCACCTGAAGGGTCCACCTTGGAAGAAAACGGTCTCCCAGCACCAAAGGTTATCTTGAATGTGAATCATAATCAAGACCAGATTGCAGTGAACAACGCGGAAAAGCAAGCAGATGCTTCGGATTCACAGCCTATGCCAGGTCCTTCAGTGGATCTAAATATATCTGAAACTGATTTCTATGAACTCGTAAGATCGTTTGTGGAAGACTGTGACTGTTGTAATTTGTATAAAAACGAATCCAATCCTGCTGCTGATGGTGAATGCACTGAGATGCTAAGAAAAGTTCTAGATGGAAAGAGTTCCTCTTAA 1515 0.4112 MRTRTLIRARTTAMQAYQQCINDLLSYVFNGSQPPPTMVNTPSQHGLPRACAPLRGFPIVVILLLCCKEVACLSEFRVDGSHLVQSVLSYVYRMKLKHSVSLKGATFTATNNTSAAASMICNEEGIMFKLVMAKTNMPDMDILSFLNLVLEKDIPVIFINTGVFDDVSRKALSTGLCYFLQEPITPNDLKYLWQHVYHSRASSARNTQNAGFQSIEPHAEGLQNTQMKQLTNNECQVLGAKRGRNDADIKGKRIDWDYTMPTTQCPVHQAYGDINRVEDMGKQKEKKNVEQEKPDSLRSAKMNSNINEYLRVSELKKRCTVWTPELHQEFLKAVQELGENNARPKQILVQMNLNGPYYLTVRQVASHLQKYRLRLKGEEKSRNSNLPTVRTSSSSMQKANYSPPEGSTLEENGLPAPKVILNVNHNQDQIAVNNAEKQADASDSQPMPGPSVDLNISETDFYELVRSFVEDCDCCNLYKNESNPAADGECTEMLRKVLDGKSSS 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01389 504 Gene3D - 79 213 - -
Spst10g01389 504 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 116 442 IPR044841 GO:0003700|GO:0006355
Spst10g01389 504 MobiDBLite consensus disorder prediction 279 299 - -
Spst10g01389 504 Pfam Myb-like DNA-binding domain 322 372 IPR001005 -
Spst10g01389 504 SUPERFAMILY Homeodomain-like 315 376 IPR009057 -
Spst10g01389 504 MobiDBLite consensus disorder prediction 279 297 - -
Spst10g01389 504 ProSiteProfiles Response regulatory domain profile. 82 197 IPR001789 GO:0000160
Spst10g01389 504 MobiDBLite consensus disorder prediction 375 410 - -
Spst10g01389 504 FunFam Two-component response regulator 313 378 - -
Spst10g01389 504 MobiDBLite consensus disorder prediction 384 407 - -
Spst10g01389 504 NCBIfam myb-like DNA-binding domain, SHAQKYF class 318 374 IPR006447 GO:0003677
Spst10g01389 504 Gene3D - 314 377 - -
Spst10g01389 504 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 322 376 IPR017930 -
Spst10g01389 504 SUPERFAMILY CheY-like 91 209 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01389 Spst-Chr10 14370425 14377622 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01389 114 375 Response Regulator Gene Family AT1G68210 30.418 2.49e-21 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst10g01389 Myb_DNA-binding 2.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01389 - - vun:114191433 434.106