Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01382 ATGGGTTTGCAAAGCCAATTAAACGACGTGTCGTCGGGTTCGATTCCGCTGCTGGTCTTGGCGCAGATAGCCATGTGCGTCAACTACCTCCGCTCGATGCTCCTGGCGGTGTTGCAATCCCTAGGTCTTGGTCGATTCCACACCCACCAGATCGTCGACGACCGCTTCCTCGCCGCTGTCGGATCCGGCCTTGCCGGAATCATCATGCTCTCCGATCAACTCACGCTCAACAACCAATTCTTCTGCTACGACGGCGCCGCCCACGACCACCCCTGCGTGGTGTGCCAGGCCGCCTTCCAGGACGGCGACCAACTCCGCATGCTCCCCTGCCGCCACGTCTTCCACCGCCGCTGCTTCGACGGGTGGCTCCACCACTACAAGTTCAACTGCCCCCTCTGCCGTTCCCCGCTCCTCTCCGACGAGCGCGTGGCCCTCACCGAACGCCGCCTCGGCCAACAACTCATCTCTTGGTTCTCCCTTCACTGA 486 0.6193 MGLQSQLNDVSSGSIPLLVLAQIAMCVNYLRSMLLAVLQSLGLGRFHTHQIVDDRFLAAVGSGLAGIIMLSDQLTLNNQFFCYDGAAHDHPCVVCQAAFQDGDQLRMLPCRHVFHRRCFDGWLHHYKFNCPLCRSPLLSDERVALTERRLGQQLISWFSLH 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01382 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 148 IPR013083 -
Spst10g01382 161 Pfam Ring finger domain 92 134 IPR001841 -
Spst10g01382 161 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Spst10g01382 161 PANTHER - 1 142 IPR044249 -
Spst10g01382 161 SMART ring_2 92 133 IPR001841 -
Spst10g01382 161 SUPERFAMILY RING/U-box 87 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01382 Spst-Chr10 14300420 14300905 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01382 1 161 C3H Transcription Factor Family AT1G15100 49.080 1.85e-47 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01382 K16282 - gmx:100803789 285.804