Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01353 ATGGGGGATCACTTTGAGTTACTGGTCGATCGATTGCTTACTGAATCCACATTAGAAGCTGCACTTGAAAGCAGGAATAAGGCTATGTTGGCTGCATCCTCAGCAGTGAATGGTGCGAATATTGATCTCAATTTTATGAAAGTTGGTGTGGATGATATAAAATTTCCAGGGAAGCTTGTAGAATGCAGGATATGTCATGATGATGATGAAGATACCAATATGGAGACACCCTGCTCCTGTCGTGGTAGTTTGAAGTACGCTCACCGCAGATGTATACAACGATGGTGTAATGAGAAGGGTGACACAACCTGTGAGATATGCCACCAGCAATTCAAGCCTGGTTATACTGCTCCTCCACCCCTATTTCAGTTTGGACGTATTCCAATGAGTTTCAGGGGGAATTGGGAGATTTCAAGAAGAGACTTGAATAGTACACATTTGGTTAGCATGGTCCCCACTGATCAAAACGTTACCACTTCTAACTACGATCAGTATTCAGCCTCTGCTACAGGAAGTTTGATTTGCTGTCGTTCAATTGCTGTTATTTTCATGGTTCTTCTGATTTTGAGACACACACTTCCCCTTGTAATTAATGGAAATAAGGAGTATTCTTTCCCACTCTTTTTGCTGTTGTTATTTCGGACTGTGGGAGTTGTTCTTCCCATATACTTCATGGTTAGAGCAGTGGCATTAATCCAGCGCCATCGGAGACAGCATCGACATCTATTAACATATAATGAAGTCTCTTATTTTTTGCTTGTTGTAACTGTTAGGAGCATCTTAATTCCTTGGCCAGTTCATCGGACGATGAAAGCGAACAAGCAGATTTGCAGCCTCAGCCTCATGTCATACATGTACTGTAAAAATAATACCCTAGCCATTAGCCACTTGAAGTAA 897 0.4169 MGDHFELLVDRLLTESTLEAALESRNKAMLAASSAVNGANIDLNFMKVGVDDIKFPGKLVECRICHDDDEDTNMETPCSCRGSLKYAHRRCIQRWCNEKGDTTCEICHQQFKPGYTAPPPLFQFGRIPMSFRGNWEISRRDLNSTHLVSMVPTDQNVTTSNYDQYSASATGSLICCRSIAVIFMVLLILRHTLPLVINGNKEYSFPLFLLLLFRTVGVVLPIYFMVRAVALIQRHRRQHRHLLTYNEVSYFLLVVTVRSILIPWPVHRTMKANKQICSLSLMSYMYCKNNTLAISHLK 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01353 298 FunFam Zinc finger family protein 51 117 - -
Spst10g01353 298 SUPERFAMILY RING/U-box 61 112 - -
Spst10g01353 298 SMART ringv_2 61 108 IPR011016 GO:0008270
Spst10g01353 298 CDD RING_CH-C4HC3_MARCH 62 108 - -
Spst10g01353 298 Pfam Protein of unknown function (DUF3675) 113 229 IPR022143 -
Spst10g01353 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 117 IPR013083 -
Spst10g01353 298 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 239 IPR033275 -
Spst10g01353 298 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
Spst10g01353 298 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01353 Spst-Chr10 14015145 14017214 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01353 51 108 C3H Transcription Factor Family AT2G37950 44.262 3.85e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01353 - - vun:114190540 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01353 10 14015145 14017214 Spst10g01353 10 14015145 14017214 ECH