Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01344 ATGATCGTGGGTTTCGGCGGCAGTGGCTTCGGCCAGGTTGCCATCGCTGTCGCCGTCTCCTTCCTCATCCGCGTCTTTTCCGCTCCCGGCCCTGCTCTCTTGCCGGAAAACGACCCTGATGATACGCCGGAAAACGGTTCTGACGACGCCGAAGCCCCGGACGCCGGCAAGGTCACACCGGTCACAATCAGATGGAGAAACATCAATTGCTCCCTTTCCGATAATTCCTCCAAGTCCGTGAGGTTTCTACTTAAAAATGTGAGTGGAGAAGCGAGGCCTGGAAGGTTATTAGCCATAATGGGACCTTCAGGTTCAGGGAAGACAACGTTGCTTAATGTTCTTGCCGGTCAGCTCACAGCATCTCCTCGGTTGCATTTGAGTGGCGTTTTGGAGTTTAATGGAAAGCATGGTTCGAAGAACGCGTACAAGTTTGCATATGTGAGACAGGAGGATCTCTTTTTCTCGCAGCTCACTGTGAGGGAGACTTTGTCTCTTGCTACCGAACTTCAGCTTCCCAACATATCTTCTGCTGAAGAGAGGGATGAATTCGTGAACAATCTCCTTTTCAAACTAGGCTTGGTGAGATTGCTTTGTATCCCGGAACTTGTGTTGGTGCAAAGTGGGTACTGCTATTGTGCTGATACCAATGTTGGTGATGCAAAAGTTCGAGGAATTAGTGGTGGTGAAAAGAAACGTTTATCCTTGGCATGTGAACTACTTGCTAGCCCATCTGTTATATTTGCTGATGAACCCACAACAGGTCTTGATGCCTTCCAGGCTGAGAAAGTCATGGAAACTCTCCAGCAACTTGCACAAGATGGTCATACTGTTATTTGTTCTATACATCAGCCAAGAGGTTCAGTGTATAGTAAATTTGACGATATTATCTTGCTAACTGAGGGTTCACTTGTTTATGCGGGTCCTGCTCGTGATGAGCCACTGACATACTTCTCAAAATTTGGGTACCAGTGCCCAGATCATATAAATCCTGCTGAATTTTTGGCTGATCTTATATCGATAGACTACAGTTCTGCTGACAGTGTCTATACCTCTCAAAAAAGAATTGATTCTCTTGTTGAGTCATTTTCACAAAGGCTATCTAGAGTTATATACGCAACTCCAATTACTGTAAATGATCTCTCTAACGGTAGAAAGAAAACCAGTCAGAGGAAAGTAGCAATGAAGAAGGGAGTTTGGTGGAAGCAATTTTGGTTGCTCCTTAAAAGAGCATGGATGCAGGCTTCCCGTGATGTACCTACAAACAAAGTTCGGGCAAGGATGTCAATTGCATCAGCAATTATCTTTGGGTCAGTATTTTGGAGAATGGGAAATTCTCAGACTTCAATACAAGACAGAATGGGATTGCTTCAGGTTACTGCAATAAACACAGCTATGGCTGCTCTCACAAAGACTGTAGGTGTGTTTCCAAAGGAACGGGCTATTGTAGATAGAGAACGTGCTAAAGGCTCATATTCCTTGGGTCCCTATCTGTTCTCAAAATTGTTGGCCGAGATTCCCATTGGAGCAGCATTTCCATTAATGTTTGGCACTGTTTTGTATCCAATGGCACGTCTTCATCCTACTTTGCAGAGGTCAGTTTCTATCTTGGGCTCTACAAGCTGGGGTGACCAGCGAATATTTGGAAAGTTCTGTGGCATTGTCACAATGGAATCTTTTGCTGCATCTGCTATGGGTCTTACTGTTGGTGCTATGGTTCCAACCACTGAAGCAGCAATGGCAGTAGGTCCCTCTCTCATGACAGTTTTTATTGTTTTTGGAGGCTACTATGTTAATCCAGAGAATACCCCAATCATCTTCCGTTGGATTCCTAATGTTTCTCTGATTAGATGGGCTTTTCAGGGACTTTGTATCAATGAATTTAGAGGTCTTCAATTTGACCATCAACATTCATTTGATATTCAAACTGGAGAACAGGCGCTAGAGCGAATTTCCTTTGGGAAAAGTAGGATTAGGGATACGGTGATAGCGCAAAATAGAATACTACTATTTTGGTATTGCACGACCTATCTTCTCCTCGAGAAAAACAAGCCCAAATACCAGCAACTTGAAACCCCTATTGACGACAACAAACCGCTTTTAAAACTTGAGGAGCTAAATTCTGAACAAGTTGATGAGACACTTGAAGCAACGCCTGTCGGCCAAGTTGATTCCAACCAGCCCCTTGAGTCACCTGGAGAAGATCTTGTTGGCCCTTTTGTCCTCCAAGGTTTGTAA 2235 0.4443 MIVGFGGSGFGQVAIAVAVSFLIRVFSAPGPALLPENDPDDTPENGSDDAEAPDAGKVTPVTIRWRNINCSLSDNSSKSVRFLLKNVSGEARPGRLLAIMGPSGSGKTTLLNVLAGQLTASPRLHLSGVLEFNGKHGSKNAYKFAYVRQEDLFFSQLTVRETLSLATELQLPNISSAEERDEFVNNLLFKLGLVRLLCIPELVLVQSGYCYCADTNVGDAKVRGISGGEKKRLSLACELLASPSVIFADEPTTGLDAFQAEKVMETLQQLAQDGHTVICSIHQPRGSVYSKFDDIILLTEGSLVYAGPARDEPLTYFSKFGYQCPDHINPAEFLADLISIDYSSADSVYTSQKRIDSLVESFSQRLSRVIYATPITVNDLSNGRKKTSQRKVAMKKGVWWKQFWLLLKRAWMQASRDVPTNKVRARMSIASAIIFGSVFWRMGNSQTSIQDRMGLLQVTAINTAMAALTKTVGVFPKERAIVDRERAKGSYSLGPYLFSKLLAEIPIGAAFPLMFGTVLYPMARLHPTLQRSVSILGSTSWGDQRIFGKFCGIVTMESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNPENTPIIFRWIPNVSLIRWAFQGLCINEFRGLQFDHQHSFDIQTGEQALERISFGKSRIRDTVIAQNRILLFWYCTTYLLLEKNKPKYQQLETPIDDNKPLLKLEELNSEQVDETLEATPVGQVDSNQPLESPGEDLVGPFVLQGL 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01344 744 Pfam ABC-2 type transporter 402 627 IPR013525 GO:0016020|GO:0140359
Spst10g01344 744 CDD ABCG_EPDR 60 307 - -
Spst10g01344 744 SMART AAA_5 93 302 IPR003593 GO:0016887
Spst10g01344 744 ProSitePatterns ABC transporters family signature. 225 239 IPR017871 GO:0005524|GO:0016887
Spst10g01344 744 Gene3D - 55 314 IPR027417 -
Spst10g01344 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 311 IPR027417 -
Spst10g01344 744 MobiDBLite consensus disorder prediction 33 56 - -
Spst10g01344 744 FunFam ABC transporter G family member 7 61 315 - -
Spst10g01344 744 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 63 325 IPR003439 GO:0005524
Spst10g01344 744 Pfam ABC transporter 84 252 IPR003439 GO:0005524
Spst10g01344 744 Pfam ABC-2 type transporter 282 355 IPR043926 GO:0140359
Spst10g01344 744 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 56 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01344 Spst-Chr10 13933116 13939718 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01344 83 390 Calmodulin-binding Proteins AT2G36910 24.204 6.17e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01344 K05681 - gmx:100788256 1297.72