Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01325 ATGGCAATCCACCACCACAATGACCAACTACAACATAATGACAATGTCTCATCTGCCCTTGATGCCCTTTACTGTGATGAGGCAGAGTGGGAAGATGAAGATGAAGAGGAGGAAGAAGATGTAGAGAGTGATGTCACAACAAATGATGATGCATATGAGCTGCACCACGCTGGAACTTCTCTTTTCCATCTGCTCTTGTTGGAGCAAGACTTGTTCTGGGAAGATGAGGAACTAAACTCTCTCTTTTCCAAAGAGAAGCTTCAACATGAAGAAGTTTATGGCTATAACAATCTGAATAATAGTGATGATATTAAGGATAATGATGGTTGTAATAATACTAATAATAATGTGCATTTCAACCCTTCTTTCTCTCAGCCTCGTCGTGAGGCAGTGGAATGGATGCTTAAAGTCAATGCTCATTATGGATTCTCTGCTCTCACTGCAACATTGGCCGTTACTTACCTGGATAGGTTCCTTCGAAGCTTCCATTTTCAAAGGGAGAAGCCTTGGAAGATCCAGCTCGTGGCTGTTACTTGCATCTCTTTAGCTGCAAAAGTTGAAGAAACTCAAGTGCCTCTTCTCTTGGACCTTCAAGTGCAAGACACTAAGTATGTGTTTGAGGCAAAAACAATTCAGAGAATGGAGCTGCTGGTTCTGTCCACCCTCAAATGGAAGATGCATCCCGTGACCCCACTCTCGTTTCTAGATCACATTATAAGAAGGCTTGGTTTGAAAACTCATCTTCACTGGGAGTTTCTCAGGCGCTGTGAGCATCTTCTCCTGTCTGTGCTTTTAGATTCAAGATTTGTTGGGTCTCTTCCTTCTGTTTTGGCCACTTCAACAATGCTGCATGTCATAGACCAGATCGAACACAGTGGTGGGATGGAATACAAAAATCAGCTTCTGAGTGTTCTCAAAATTAGCAAGGAGAAAGTAGATGAATGTTATAATGCAATTCTCCAACTCTCAAATGCCAATAATTATGGTCATAACAACAACATTAACAAACGCAAGTGTGAGCAAATTCCAGACAGTCCTAGTGGCGTAATTGATGCTGCATTTTGCTCTGATGGTTCCAACGATTCGTGGGCAGTGGGGTCATCATTATATTCACCACCAGAGCCTCTGTTCAAGAAGAGCAGAACCCAAGGACAACAAATGAAATTGTCACCACTTAACCGGGTCATTGTCGGAATTGTTGGCACCTCTCCATGA 1215 0.4255 MAIHHHNDQLQHNDNVSSALDALYCDEAEWEDEDEEEEEDVESDVTTNDDAYELHHAGTSLFHLLLLEQDLFWEDEELNSLFSKEKLQHEEVYGYNNLNNSDDIKDNDGCNNTNNNVHFNPSFSQPRREAVEWMLKVNAHYGFSALTATLAVTYLDRFLRSFHFQREKPWKIQLVAVTCISLAAKVEETQVPLLLDLQVQDTKYVFEAKTIQRMELLVLSTLKWKMHPVTPLSFLDHIIRRLGLKTHLHWEFLRRCEHLLLSVLLDSRFVGSLPSVLATSTMLHVIDQIEHSGGMEYKNQLLSVLKISKEKVDECYNAILQLSNANNYGHNNNINKRKCEQIPDSPSGVIDAAFCSDGSNDSWAVGSSLYSPPEPLFKKSRTQGQQMKLSPLNRVIVGIVGTSP 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01325 404 CDD CYCLIN_AtCycD-like_rpt1 127 224 - -
Spst10g01325 404 PANTHER CYCLINS 81 321 IPR039361 -
Spst10g01325 404 FunFam D3-type cyclin 120 227 - -
Spst10g01325 404 Gene3D - 228 319 - -
Spst10g01325 404 FunFam CYCLIN D32 228 317 - -
Spst10g01325 404 CDD CYCLIN_AtCycD-like_rpt2 229 319 - -
Spst10g01325 404 Gene3D - 125 227 - -
Spst10g01325 404 SMART Cyclin_C_2 229 358 IPR004367 -
Spst10g01325 404 SUPERFAMILY Cyclin-like 123 227 IPR036915 -
Spst10g01325 404 Pfam Cyclin, N-terminal domain 125 226 IPR006671 -
Spst10g01325 404 ProSitePatterns Cyclins signature. 127 158 IPR006671 -
Spst10g01325 404 Pfam Cyclin, C-terminal domain 229 334 IPR004367 -
Spst10g01325 404 SMART cyclin_7 132 220 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01325 Spst-Chr10 13795246 13796920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01325 1 322 Core Cell Cycle Gene Families AT4G34160 52.484 5.22e-109 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01325 K14505 - gmx:547740 637.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01325 10 13795246 13796920 Spst10g01325 10 13795246 13796920 ECH
Spst8g02193 8 31652234 31653922 Spst10g01325 10 13795246 13796920 ECH
Spst3g04062 3 91515254 91516710 Spst10g01325 10 13795246 13796920 PCT