Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01293 ATGGAGGCCAGAGAGGAATTCGAAGTGGACCATCTCACCGCACCCATAGGGACCAGTTTCTCTCAGTTACTATTCGGAGATGACGATGACGATCATCATCATCATCATGCAACTGCATTGCCTCTCGCTCAGGACCATTACTCTTACAGTCACAACCACCTTTTCTCCTTTCACAAGCCTCCCAAAATGCTATGTTTTGGAGACCATCAAAACCAAGCCGACCTTTTGCTTCCTCAAACCAACGTCACCCCTCAGAAATCCGTCATCACTTCCAGTGACTCCTCTTCTGCTTCCTCCTCCAACTACACCAACTCCGCCTTCAATTCCTTACCCAAGTCTAATAGTTTGCAGAAAAAGCGGAATGGGTTGGGACAAGAAGCAGTGACAAAGGTAGGTGTTGGAGGCCAGAGACAAACTAAGAAGAACAAAGCAGAGAACCCCACCTCAACCGGACATGCAAAGCAGAGGAAGGAGAAGCTTGGGGAACGAATTGCAGCGTTACAACAGCTTGTTTCTCCCTTCGGCAAGACAGATACAGCATCAGTGCTTCACGAAGCCATGGGTTACATAAGATTTCTTCATGACCAAGTTCATGTCCTGTGCTCTCCTTACTTGCAAAGTTTACCTTCCTCACCCCACCAACATCAGCACGTCCCGCTTGATGGGGACAACATACTGCACATTACCTTACTTGAAAATGCTGAGCCTGGTTTGTGGTCACTGAGCACAGGGGACGGAGAAAACAATGAAGAGGAAGTCAGCAAGGACTTGAGAAGTAGGGGTCTGTGCTTGATCCCTGTGGGATGCACCGGACACGTGGGCAGCAGCAATGGTGCTGATTTTTGGTCACCTGGTGCAATAGGGAACAAGGTTTCACCATCAGCCAAGCACTTATCTGGAGATGGATGGGTGAGGAGTCATACAAAAGGCAGAAGATTAATTGAATTGGTGAAATGCAGTGATGCTGGGACCAGAACTATAAATCTGGTCAAGTTCAAATTAAATGCACACACATGCTTGAAAAGTGGTTTTCTTGCTGAGATGTTTGTTGCAGTTTGCATTAATAACCATTCCTACACATTTCTCCTGCATGACATCAATTTGACCAGAAAATTTGATCCTGAGGAGTCTGCAGCTACTAATTCAATTTGGATTGGCCTTCTCTTAACCAATTCATTGAGTCCAAATGCAGATGTGAATACAGAATTGGCTTTAAAGAATTGTTTTGAATGTGATCATGTCAATATTGTCTGTGATGGTTGA 1263 0.4545 MEAREEFEVDHLTAPIGTSFSQLLFGDDDDDHHHHHATALPLAQDHYSYSHNHLFSFHKPPKMLCFGDHQNQADLLLPQTNVTPQKSVITSSDSSSASSSNYTNSAFNSLPKSNSLQKKRNGLGQEAVTKVGVGGQRQTKKNKAENPTSTGHAKQRKEKLGERIAALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVHVLCSPYLQSLPSSPHQHQHVPLDGDNILHITLLENAEPGLWSLSTGDGENNEEEVSKDLRSRGLCLIPVGCTGHVGSSNGADFWSPGAIGNKVSPSAKHLSGDGWVRSHTKGRRLIELVKCSDAGTRTINLVKFKLNAHTCLKSGFLAEMFVAVCINNHSYTFLLHDINLTRKFDPEESAATNSIWIGLLLTNSLSPNADVNTELALKNCFECDHVNIVCDG 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01293 420 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 205 IPR036638 GO:0046983
Spst10g01293 420 Gene3D - 135 208 IPR036638 GO:0046983
Spst10g01293 420 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 193 IPR011598 GO:0046983
Spst10g01293 420 MobiDBLite consensus disorder prediction 135 149 - -
Spst10g01293 420 MobiDBLite consensus disorder prediction 86 159 - -
Spst10g01293 420 MobiDBLite consensus disorder prediction 86 122 - -
Spst10g01293 420 CDD bHLH_AtbHLH_like 153 200 IPR045239 -
Spst10g01293 420 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 54 272 - -
Spst10g01293 420 FunFam Transcription factor bHLH113 136 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01293 Spst-Chr10 13565621 13569686 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01293 153 284 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31730 45.865 2.80e-32 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01293 - - gmx:100809317 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01293 10 13565621 13569686 Spst10g01293 10 13565621 13569686 ECH