Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01290 ATGAGACAGAAACCAGGACACTGGAGAAAGTGTGTGGACTGTGGACTACCACCTATTCATAACGATGGAAATTTCCTGTGGAACTGGACCCTTGGTGCATTTCTTCCTCTGCGCATATGCACGCTCCAACTACAAAGCTTGAAGAGGAACACCAAAAAGCCCCAACAAGAAAACACCCACGCAGATGCCCTGGGTCGACAGGAAAAACTGTTCTTAAATAGCTATGGACCAGGCTATCTTGTTTTCAACTTTTTAGAACCATTATTGGAAATAAGAAGGGATTCCAATGAGCCTTTTTTCATATATTCAACTCGCTTTGATCATCCGAACTCATCAAAGAATTTAGGGGAAATGATGATTAAAGAAGATGAAACAATTCTATCAACAGCCAAAGAACAACCAGGTCAAGTGATGAACGGAGACCAGGACAACTACAGAAGCGAAGATGACAGCCCCAAAGAGTGGTTGAACCTGAACATAGGAGGCACTTCACTTTCAACTGCTGGAGACCCTGATTCGCAATCAAGACCAGCCACTGCAAAAGTTTTTTCATGCAACTTCTGCATGAGGAAGTTCTTCAGTTCACAGGCATTAGGAGGTCATCAAAACGCCCACAAGAGGGAAAGGGGAGCTGCCAGAAGATACCAATCTCAGAGGTCGATGGCAATATTGGGCTTCTCCATGAACACACCTACTATGCTTCGATCACTTGGTGTCCAGCCTCATTCACTCGTTCACAAGCCATGCAGAGGAGGTACTGTGGTGGCACCCAGCTTTCATGATGCACATGCAAGGCTTGGGATGGCTTGGACGGCTTTCTCGTCAGAGGATCAAACTGATCTGGTGTGGCCAGGTAGCTTTCGCTTGGTTCCACAACAGCCCCAGCCACCACAGGAGCCACTCAAGCTTGATTTAGACCTCAGACTCTGA 930 0.4656 MRQKPGHWRKCVDCGLPPIHNDGNFLWNWTLGAFLPLRICTLQLQSLKRNTKKPQQENTHADALGRQEKLFLNSYGPGYLVFNFLEPLLEIRRDSNEPFFIYSTRFDHPNSSKNLGEMMIKEDETILSTAKEQPGQVMNGDQDNYRSEDDSPKEWLNLNIGGTSLSTAGDPDSQSRPATAKVFSCNFCMRKFFSSQALGGHQNAHKRERGAARRYQSQRSMAILGFSMNTPTMLRSLGVQPHSLVHKPCRGGTVVAPSFHDAHARLGMAWTAFSSEDQTDLVWPGSFRLVPQQPQPPQEPLKLDLDLRL 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01290 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 183 210 IPR013087 -
Spst10g01290 309 Gene3D Classic Zinc Finger 171 226 - -
Spst10g01290 309 ProSitePatterns Zinc finger C2H2 type domain signature. 185 205 IPR013087 -
Spst10g01290 309 SUPERFAMILY beta-beta-alpha zinc fingers 180 209 IPR036236 -
Spst10g01290 309 PANTHER ZINC FINGER PROTEIN 4-LIKE 119 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01290 Spst-Chr10 13543387 13545134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01290 170 297 C2H2 Transcription Factor Family AT1G24625 41.667 6.59e-19 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01290 - - gmx:100811125 305.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01290 10 13543387 13545134 Spst10g01290 10 13543387 13545134 ECH