Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01287 ATGACTAGTCCAATTGGAGAATTGACAAGCAATAACGACGGTACCTCAGGGTGGATGGGTACTGAACAATCTGAATTGTCTGTGAAAACACAAGGGTCTGAATGTTTACAAAAGGGACAAAGGGAGTCTGGTACCGTCTTAACCAGTTCACCTATCGATGAAAAATCAAATCAAGTTTCTGCCAGTGTGACAGAGAATTCTGTTATTCTACCGCTTGCTTCATCGAATCAAGTTTCTGCCAATGTTACGGAGAATTCTGTTATTCTACCGCCTGCTTCATCAAATCAAGTTTCTGGGAATGTTACAGAGAATTCTGTTATTCTACTGCCTGCTTCATCAAACGAAGTTTCTGTGGATGTTACAGGGAATTCTGTTAGTCTACCGCCTGCTTCATCAAATAAAATTTCTGCCAATGTTACAGAGAATTCTGTTATTCTGCTGCCTGCACCGCCTCAGGATGATTTGGAAAAGAATTGCCAGACCGTAGAGGGTTCACACCTTGAACAAAGTACCGATGAACAAGTCCCTGTACAGTTACCTAACGATAAATCTGAAAACCCATGTCCATTGTCCGAAAATGAACCTGTAGTATCTCCATGCCAACCATTATCTGAAAATAAACCTGTAGAATCCCCATGCCAACCATTATCTGAAAACGAGCCTGTTGAATCTCCATGCCAATCATTGTCTAAAAATAAACCAGTAGAATCCCCATGCCAGCCATTGTCTGAAAATGTACTTGTAGAATCTCCATGCCAATCATTGTCTAAAAATAAACCAGTAGAATCCCCATGCCAGCCATTGTCTGAAAATGAACCTGTAGAATCTCCATGCCAATCATTGTCTGAAAATAAAGCTGTAGAGTCCCCATGCCAACCATTGTCTGAAAATGAACCTGTTGAATCTTCATTCCAATCATTGCCTGAAAATAAACCTTTAGAATCCCCATGCCAACCATTGTCCGAAAATGAACCTGTAGAATCCGTTCCTGACTTTGCTATTGATGGCCAAATGCAATCTAGTCCAGCTGAAGCTAATATGAGTTCTGGGAATGAATTGTTGGATTCACCTACTGGAGATGTGAACAATATTAGTTCCATTTGTCCAGAAAGAGTGTCTTATAGCCCCACTAATTCACTATTGAGGCGCAGGGGTAAAAGAAACTCAAAATTATTGAAGAAGACGTATATGCTACGGTCAATAGGAAGCAGTGACAGAGCTTTGCGGTCAAAAACAAAAGAAAATCCCAGGGCACCTGAAACAAATAATAATAATGATGCAATGCAGAGGAAAAGTGGGAGGAAGAAGAGAAAGAGTGGAGAGGTGGGAATTGCCGATCAATTTTCTAGAATCAAAAGTCACTTAAGATATTTATTAAACAGAATAGGCTATGAGAAAAACTTGATTGATGCTTATTCTGGCGAGGGCTGGAAAGGGCACAGTATGGAAAAATTGAAGCCTGAGAAAGAGCTTCAACGGGCCAAGTCTGAAATTCTTCGACGCAAGTTGAACATTAGGGATCTATTTCGAAATTTGGATTCATTGTGTGCTGAAGGAAAGCTGCCAGAGTCTTTATTTGATTCCGAGGGAGAGATTGACAGTGAGGATATATTCTGTGCAAAATGCCATTCCAAAGAGTTGAGCTGTAATAATGATATAATTCTCTGTGATGGTGTTTGTGACCGGGGATTTCATCAGCTCTGTTTGGATCCTCCGTTGTTAACTGCAGACATTCCACCTGGTGATGAGGGTTGGTTATGCCCAGGATGTGATTGCAAAGATGACTGCATGGACCTTGTTAATGACTCCTTCGGAACAAGTCTCTGTATTAATGACCCCTGGGAGAGGGTTTTTCCTGAAGCAGCAAGAGCTGCTGGAAATAATATGGATAACAACTTGGGACTTCCTTCTGATGATTCTGATGATGATGATTATAATCCTAATGGTCCAGAGGATGTGAAACTTGAAGGAGATGAATCAAGTTCTGATGAATCTGACTATGCTTCTGCTTCTGAGAAATTGGAGGGTTCACTTGGGGATCAGTACTTGGGCCTTCCATCTGAAGATTCTGATGATGGTGATTATAATCCTGGTGCCCCAGATGTCGATTGTAAAGTTAATGAAGAAAGTTCAAGCTCTGATTTCACTTCTGACTCTGAGGATCTTGCTGCTGCAATTGTGGATTACACGACCCATGAACAGAATGGTGAAATCAGATCGGCATCTTTGGATGATGTTAAGTACTTGAAAAGTTCTAGAAAACAAAAGGGTAAGGCTGGTAAGAAGCTATCTATGGCTGATGAACTCTCATCTTTACTAGAGCCAGATTCTGGTCAAGACGGTTCTACTCCTGTTTCTGGGAAAAGGAATTTGGAAAGGTTGGACTACAAAAAGCTGTATGATGAGACATACCACAGTGATACTAGTGATGATGAAGATTGGACAGCCACTGCTACTCCAAGTAGAAAGAAGAAAGGCAATGTGACTCCAGTGTCACTAAATGGATATGCTTCAAATAATTCCAAGCACACTCCTAAGAGGAATGGCCACCAGAATAAATTTGAAAATACAAAAAAATCACCTGCTAAATCACTCCATGGCTGTGTGAAATCTGATTCCAGGGATAGAAGGTCTTCAGCATACAAAAGGCTAGGGGAAGCTGTAATTCAGAGACTTCACGTATCTTTTAAAGAAAATCACTATCCAGATAGAACCACAAAAGAAAGCTTGGCTCAAGAACTTGGACTTACTTGTCAGCAGGTTGCCAAATGGTTTGACAATACTCGATGGAGCTTCCGGCATTCATCAAAAAAGGAAACCAATTCAGGTAGAAATGCTTTACAGCAAACTCCTGACAGCAGAGTTGAAAATGAGGGGGATGAATGTGAATTAATGTCCCAGGAGGTCAGTGGAGAAAAATCAAAAGCCCCAAGCTCTAGAAAAAGGAAGCGTTTATCAGAACACCAACCATCTGAAGCACAGCTGGATACCAATGGCAGGGCATCAAGCTCACCAAATACTCAACAAACCCTAATAGGCAAGAAAATGAAGACAAGGAGAAGAAAATGA 3069 0.4102 MTSPIGELTSNNDGTSGWMGTEQSELSVKTQGSECLQKGQRESGTVLTSSPIDEKSNQVSASVTENSVILPLASSNQVSANVTENSVILPPASSNQVSGNVTENSVILLPASSNEVSVDVTGNSVSLPPASSNKISANVTENSVILLPAPPQDDLEKNCQTVEGSHLEQSTDEQVPVQLPNDKSENPCPLSENEPVVSPCQPLSENKPVESPCQPLSENEPVESPCQSLSKNKPVESPCQPLSENVLVESPCQSLSKNKPVESPCQPLSENEPVESPCQSLSENKAVESPCQPLSENEPVESSFQSLPENKPLESPCQPLSENEPVESVPDFAIDGQMQSSPAEANMSSGNELLDSPTGDVNNISSICPERVSYSPTNSLLRRRGKRNSKLLKKTYMLRSIGSSDRALRSKTKENPRAPETNNNNDAMQRKSGRKKRKSGEVGIADQFSRIKSHLRYLLNRIGYEKNLIDAYSGEGWKGHSMEKLKPEKELQRAKSEILRRKLNIRDLFRNLDSLCAEGKLPESLFDSEGEIDSEDIFCAKCHSKELSCNNDIILCDGVCDRGFHQLCLDPPLLTADIPPGDEGWLCPGCDCKDDCMDLVNDSFGTSLCINDPWERVFPEAARAAGNNMDNNLGLPSDDSDDDDYNPNGPEDVKLEGDESSSDESDYASASEKLEGSLGDQYLGLPSEDSDDGDYNPGAPDVDCKVNEESSSSDFTSDSEDLAAAIVDYTTHEQNGEIRSASLDDVKYLKSSRKQKGKAGKKLSMADELSSLLEPDSGQDGSTPVSGKRNLERLDYKKLYDETYHSDTSDDEDWTATATPSRKKKGNVTPVSLNGYASNNSKHTPKRNGHQNKFENTKKSPAKSLHGCVKSDSRDRRSSAYKRLGEAVIQRLHVSFKENHYPDRTTKESLAQELGLTCQQVAKWFDNTRWSFRHSSKKETNSGRNALQQTPDSRVENEGDECELMSQEVSGEKSKAPSSRKRKRLSEHQPSEAQLDTNGRASSSPNTQQTLIGKKMKTRRRK 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01287 1022 ProSitePatterns Zinc finger PHD-type signature. 539 590 IPR019786 -
Spst10g01287 1022 MobiDBLite consensus disorder prediction 402 442 - -
Spst10g01287 1022 SMART HOX_1 877 939 IPR001356 GO:0003677
Spst10g01287 1022 MobiDBLite consensus disorder prediction 627 719 - -
Spst10g01287 1022 MobiDBLite consensus disorder prediction 1 59 - -
Spst10g01287 1022 MobiDBLite consensus disorder prediction 163 325 - -
Spst10g01287 1022 SUPERFAMILY FYVE/PHD zinc finger 528 596 IPR011011 -
Spst10g01287 1022 MobiDBLite consensus disorder prediction 163 188 - -
Spst10g01287 1022 CDD homeodomain 889 936 IPR001356 GO:0003677
Spst10g01287 1022 MobiDBLite consensus disorder prediction 197 312 - -
Spst10g01287 1022 MobiDBLite consensus disorder prediction 820 845 - -
Spst10g01287 1022 FunFam Homeobox protein HAT3.1 877 946 - -
Spst10g01287 1022 ProSiteProfiles Zinc finger PHD-type profile. 536 593 IPR019787 -
Spst10g01287 1022 Gene3D - 871 943 - -
Spst10g01287 1022 MobiDBLite consensus disorder prediction 750 879 - -
Spst10g01287 1022 Pfam PHD-finger 538 593 IPR019787 -
Spst10g01287 1022 Pfam Homeodomain 886 931 IPR001356 GO:0003677
Spst10g01287 1022 MobiDBLite consensus disorder prediction 935 1022 - -
Spst10g01287 1022 CDD PHD_PRHA_like 538 590 IPR045876 -
Spst10g01287 1022 FunFam Homeobox protein HAT3.1 519 597 - -
Spst10g01287 1022 SUPERFAMILY Homeodomain-like 875 937 IPR009057 -
Spst10g01287 1022 ProSiteProfiles 'Homeobox' domain profile. 875 935 IPR001356 GO:0003677
Spst10g01287 1022 MobiDBLite consensus disorder prediction 790 819 - -
Spst10g01287 1022 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 520 601 IPR013083 -
Spst10g01287 1022 MobiDBLite consensus disorder prediction 991 1013 - -
Spst10g01287 1022 SMART PHD_3 538 591 IPR001965 -
Spst10g01287 1022 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 313 998 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01287 Spst-Chr10 13526435 13533682 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01287 401 984 Homeobox Transcription Factor Family AT3G19510 42.903 8.71e-128 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Spst10g01287 PHD 3.9e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01287 - - aprc:113871869 1093.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01287 10 13526435 13533682 Spst10g01287 10 13526435 13533682 ECH