Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01286 ATGAGAAGGAAGTGGCGTGGAAGAGGAACTTACGTTGGTGGCGTGAGTGAGAGAGCAGTCTCCGCAACGAATGGAAAAAGGAGTGCGAGGAAGAAGGAGGGTCGATCTGAAATGGGGATTGGATGCGAAGGGAGGGTGAGGGAAGAGAGAGAGTTGAGTTTCTTGAGAGTTCCCTTTTCTCAATCTCAGCGCCAAAGTGAGAAAAAAGCGGAAAATTTGATACGGAAGGAATCTTTTATTTCAGAACTTGATGCCCAGCATGGGAAGGTAAATTTATTTCAGAACTTGATGCCCAGCGTGGGAAGCATCACTTACTATTTTCCAACTTACCAATCTGTGTCTCCTAATCCACCGGTGAACACTTGCAGACTGGTGAGAAAAGAAGGAGCATATACTGTGAGATCAGGCCACTGCTCTGAGCTAGCTCGAGTTGCACCACGAGAACCTGTAATCCAAGTCACGACAGCCATGATTTCCAATTGCTCAGAAAGTCACCCTCTTATCTCTGACATCCACTTCTTCAAGATTATTCTGGATGCTACTCTTCAACAAGGAAAACTTAAAGTTTTGCAGATGATTCCAAAAAAGTTCACTCAGAAACATGGTGCTAATTTGTCAAACCCAGTTTTTCTCAAGCTTCCAGATGGCATTGAATGGGAAATTTGTTGGACTAAAGATCGTGCTGGTGATGTTTGGTTTGAAAAGGGTTGGAAGGAATTTGTTACTTATTACTCGCTTGATCACGGTCATCTTGTAATATTCAAATACCAACAAACAAGTAAATTGGAGGTACACATATTCGATGGAAGTGCCGTTGAAATAAATTATCCCTCCAAAAGTACTCAAAACCACTCTGCTAAAGTTTTGTTCGAGGAAACTCCAAAAACATCAAGTCCCAGACCTCCTAAAAAACATAGGACACGCTCAAGTGAAGTTGTTGGACAAAACTCCAATTTGCCTCAGCATGTCCAAGTTAAAGTTGATCAGTCTCAAGAGAACAGCCGTGGTGCCACCAAATCTAAAACTCCCTCTTTTACGGTTGTCATGAAGAATTCCTACGTGAAAGGATATTTGCTGGTAATTCCATCAACATTTGTAAAAAAGTATTTCAAGGAAGAGGGAAAATATGATACACTCCTCCAGGTCTTGGATGGGAGAACTTGGCCTGTAAAATTAAAGGATGGCAAATTTTGCACAGGATGGAACAATTTTGCATCAAATAATCGTTTAAATACTGGGGATGTTTGTATTTTTGAGCTAACCGAGAGCCAAAGCCTATGTTTTAAAGTATCAATCATTCGGATTTCAGAAGATAATTGTTCAAGTTCACAAGTTAAAGGAGATGGTGACCCTATGAATATCCCAGATTTCAAATGTATCACTGATATTCCCATCAAAGGTAAAGAATAA 1410 0.4071 MRRKWRGRGTYVGGVSERAVSATNGKRSARKKEGRSEMGIGCEGRVREERELSFLRVPFSQSQRQSEKKAENLIRKESFISELDAQHGKVNLFQNLMPSVGSITYYFPTYQSVSPNPPVNTCRLVRKEGAYTVRSGHCSELARVAPREPVIQVTTAMISNCSESHPLISDIHFFKIILDATLQQGKLKVLQMIPKKFTQKHGANLSNPVFLKLPDGIEWEICWTKDRAGDVWFEKGWKEFVTYYSLDHGHLVIFKYQQTSKLEVHIFDGSAVEINYPSKSTQNHSAKVLFEETPKTSSPRPPKKHRTRSSEVVGQNSNLPQHVQVKVDQSQENSRGATKSKTPSFTVVMKNSYVKGYLLVIPSTFVKKYFKEEGKYDTLLQVLDGRTWPVKLKDGKFCTGWNNFASNNRLNTGDVCIFELTESQSLCFKVSIIRISEDNCSSSQVKGDGDPMNIPDFKCITDIPIKGKE 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01286 469 SMART B3_2 345 436 IPR003340 GO:0003677
Spst10g01286 469 SMART B3_2 173 270 IPR003340 GO:0003677
Spst10g01286 469 Gene3D - 324 437 IPR015300 -
Spst10g01286 469 ProSiteProfiles B3 DNA-binding domain profile. 193 270 IPR003340 GO:0003677
Spst10g01286 469 CDD B3_DNA 172 268 IPR003340 GO:0003677
Spst10g01286 469 CDD B3_DNA 343 434 IPR003340 GO:0003677
Spst10g01286 469 Gene3D - 168 271 IPR015300 -
Spst10g01286 469 ProSiteProfiles B3 DNA-binding domain profile. 344 436 IPR003340 GO:0003677
Spst10g01286 469 SUPERFAMILY DNA-binding pseudobarrel domain 339 436 IPR015300 -
Spst10g01286 469 SUPERFAMILY DNA-binding pseudobarrel domain 172 269 IPR015300 -
Spst10g01286 469 MobiDBLite consensus disorder prediction 16 40 - -
Spst10g01286 469 MobiDBLite consensus disorder prediction 290 315 - -
Spst10g01286 469 Pfam B3 DNA binding domain 192 269 IPR003340 GO:0003677
Spst10g01286 469 Pfam B3 DNA binding domain 345 434 IPR003340 GO:0003677
Spst10g01286 469 PANTHER B3 DOMAIN-CONTAINING 339 437 - -
Spst10g01286 469 MobiDBLite consensus disorder prediction 24 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01286 Spst-Chr10 13517516 13525982 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01286 173 463 B3 DNA Binding Superfamily AT3G18990 28.571 5.84e-32 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst10g01286 B3 3.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01286 - - var:108325311 380.948