Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01262 ATGAGCTGCAATGGTTGTCGTGTCCTCAGAAAGGGTTGCAGTGAGGACTGCATGCTACGACATTGCCTACTATGGATAGACAACCCACAAGCCCAAGCTCACGCCACCCTCTTTGTGGCCAAGTTCTTTGGCCGTGCCGCTCTTATGTCCTTTCTTTCCGCTGTACCTGCCAACCAAAGATCCGCTTTGTTTCAGTCACTGCTTTATGAAGCTGTGGGGCGTACTATAAATCCAGTGAACGGAGCAGTGGGGCTGTTGTGGACTGGGAACTGGCACCTTTGCCAAATGGGTGTGGAGAAAGTGCTCCGAGTTGGTGCTGCGTTGACCCCACTCCCTCACTTCTTGAGTAGTGTAGGTGTAGATGAACAACACCATGTAACTGAGAGAGTGATGATTGGAAGTGGAATATTGTGTCACGAGGCAAAGAAGCAACATGTGGGGACACCCTCTCAGGAATCTGAGACCTCCTATTTGGGAAGTAGACCACAGGATTGTGCTCCTCAAAGTCAAAGGAACCTCCTTACACTATTCTTCTGA 537 0.4991 MSCNGCRVLRKGCSEDCMLRHCLLWIDNPQAQAHATLFVAKFFGRAALMSFLSAVPANQRSALFQSLLYEAVGRTINPVNGAVGLLWTGNWHLCQMGVEKVLRVGAALTPLPHFLSSVGVDEQHHVTERVMIGSGILCHEAKKQHVGTPSQESETSYLGSRPQDCAPQSQRNLLTLFF 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01262 178 Pfam Lateral organ boundaries (LOB) domain 2 99 IPR004883 -
Spst10g01262 178 MobiDBLite consensus disorder prediction 148 166 - -
Spst10g01262 178 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Spst10g01262 178 MobiDBLite consensus disorder prediction 143 166 - -
Spst10g01262 178 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01262 Spst-Chr10 13381817 13383217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01262 1 119 AS2 family AT3G49940 72.269 2.04e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst10g01262 LOB 7.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01262 - - gmx:100816269 287.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01262 10 13381817 13383217 Spst10g01262 10 13381817 13383217 ECH
Spst3g04105 3 92235881 92236661 Spst10g01262 10 13381817 13383217 PCT