Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01260 ATGGCTTTGGAGGCTTTGAATTCTCCCACAGCAGCCGCCACTCCCTTCCGTGCCTACCAAGAAGAAGAGGAGGAGGTTGACCTTCAGCTGCGCGAGCCTTGGGCTAAAAGAAAACGCTCCAAACGACCGCGTTTTGAGACCGAGGAAGAGTACCTCGCTCTCTGCCTCATCATGCTCGCACAAAGCGGCAACGATAACGCCAACAAATTTTCTCACCGCCAACCGTCACCGTCACAGTCGCAGAAAGAAGCGTCACCGCCGCTCAAATTATCTCACAGGTGCACCGTTTGCAACAAGGCTTTTCCTTCTTACCAAGCGCTCGGTGGACACAAGGCCAGCCACCGCAAGTCCTCCTCCGAATCCACCACTCTCTCCGCCGTCGCCAACGACAGCGTTTCCGCTTCCACCGTCGTCGGCGGCGGAAGGTTGCACCAGTGTTCTATCTGTCACAAGAGTTTCCCCACGGGACAGGCCCTGGGTGGCCACAAGCGCTGCCACTACGACGGCGGCAACCACCACAGTAACAGCATCGCCAACGGCAACAACAACAGCGGCGTCACTTCCTCCTCCGACGGCGTTGGCGGCGTTGCCGCCTCCTCCCACACGCTACGTGGATTTGATCTGAACCTCCCGGCGCCGCTGACCGAGTTCTGGCCGCCGGTGGGGTTCGACTTCAGGAAGAAGGTCGGCGGAGGCGGCGAGCAAGAGGTGGAAAGCCCGTTGCCGGTAACCGCCACCAAGAGGGCGTGTTTGTTTTCAGGGGAGGACCATGATGACGGCGATGAAACGGCGTAG 795 0.595 MALEALNSPTAAATPFRAYQEEEEEVDLQLREPWAKRKRSKRPRFETEEEYLALCLIMLAQSGNDNANKFSHRQPSPSQSQKEASPPLKLSHRCTVCNKAFPSYQALGGHKASHRKSSSESTTLSAVANDSVSASTVVGGGRLHQCSICHKSFPTGQALGGHKRCHYDGGNHHSNSIANGNNNSGVTSSSDGVGGVAASSHTLRGFDLNLPAPLTEFWPPVGFDFRKKVGGGGEQEVESPLPVTATKRACLFSGEDHDDGDETA 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01260 264 Pfam C2H2-type zinc finger 144 168 - -
Spst10g01260 264 Pfam C2H2-type zinc finger 92 116 - -
Spst10g01260 264 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 37 212 IPR044653 GO:0003700
Spst10g01260 264 SUPERFAMILY beta-beta-alpha zinc fingers 92 166 IPR036236 -
Spst10g01260 264 MobiDBLite consensus disorder prediction 1 27 - -
Spst10g01260 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Spst10g01260 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 166 IPR013087 -
Spst10g01260 264 SMART c2h2final6 144 166 IPR013087 -
Spst10g01260 264 SMART c2h2final6 92 114 IPR013087 -
Spst10g01260 264 MobiDBLite consensus disorder prediction 66 89 - -
Spst10g01260 264 ProSitePatterns Zinc finger C2H2 type domain signature. 146 166 IPR013087 -
Spst10g01260 264 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Spst10g01260 264 MobiDBLite consensus disorder prediction 108 129 - -
Spst10g01260 264 Gene3D Classic Zinc Finger 90 166 - -
Spst10g01260 264 MobiDBLite consensus disorder prediction 66 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01260 Spst-Chr10 13362790 13363584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01260 1 242 C2H2 Transcription Factor Family AT1G27730 43.750 2.15e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst10g01260 zf-C2H2_6 1.4e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01260 - - vum:124819975 405.601