Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst10g01260 | ATGGCTTTGGAGGCTTTGAATTCTCCCACAGCAGCCGCCACTCCCTTCCGTGCCTACCAAGAAGAAGAGGAGGAGGTTGACCTTCAGCTGCGCGAGCCTTGGGCTAAAAGAAAACGCTCCAAACGACCGCGTTTTGAGACCGAGGAAGAGTACCTCGCTCTCTGCCTCATCATGCTCGCACAAAGCGGCAACGATAACGCCAACAAATTTTCTCACCGCCAACCGTCACCGTCACAGTCGCAGAAAGAAGCGTCACCGCCGCTCAAATTATCTCACAGGTGCACCGTTTGCAACAAGGCTTTTCCTTCTTACCAAGCGCTCGGTGGACACAAGGCCAGCCACCGCAAGTCCTCCTCCGAATCCACCACTCTCTCCGCCGTCGCCAACGACAGCGTTTCCGCTTCCACCGTCGTCGGCGGCGGAAGGTTGCACCAGTGTTCTATCTGTCACAAGAGTTTCCCCACGGGACAGGCCCTGGGTGGCCACAAGCGCTGCCACTACGACGGCGGCAACCACCACAGTAACAGCATCGCCAACGGCAACAACAACAGCGGCGTCACTTCCTCCTCCGACGGCGTTGGCGGCGTTGCCGCCTCCTCCCACACGCTACGTGGATTTGATCTGAACCTCCCGGCGCCGCTGACCGAGTTCTGGCCGCCGGTGGGGTTCGACTTCAGGAAGAAGGTCGGCGGAGGCGGCGAGCAAGAGGTGGAAAGCCCGTTGCCGGTAACCGCCACCAAGAGGGCGTGTTTGTTTTCAGGGGAGGACCATGATGACGGCGATGAAACGGCGTAG | 795 | 0.595 | MALEALNSPTAAATPFRAYQEEEEEVDLQLREPWAKRKRSKRPRFETEEEYLALCLIMLAQSGNDNANKFSHRQPSPSQSQKEASPPLKLSHRCTVCNKAFPSYQALGGHKASHRKSSSESTTLSAVANDSVSASTVVGGGRLHQCSICHKSFPTGQALGGHKRCHYDGGNHHSNSIANGNNNSGVTSSSDGVGGVAASSHTLRGFDLNLPAPLTEFWPPVGFDFRKKVGGGGEQEVESPLPVTATKRACLFSGEDHDDGDETA | 264 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst10g01260 | 264 | Pfam | C2H2-type zinc finger | 144 | 168 | - | - | |
Spst10g01260 | 264 | Pfam | C2H2-type zinc finger | 92 | 116 | - | - | |
Spst10g01260 | 264 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED | 37 | 212 | IPR044653 | GO:0003700 | |
Spst10g01260 | 264 | SUPERFAMILY | beta-beta-alpha zinc fingers | 92 | 166 | IPR036236 | - | |
Spst10g01260 | 264 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Spst10g01260 | 264 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 92 | 119 | IPR013087 | - | |
Spst10g01260 | 264 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 144 | 166 | IPR013087 | - | |
Spst10g01260 | 264 | SMART | c2h2final6 | 144 | 166 | IPR013087 | - | |
Spst10g01260 | 264 | SMART | c2h2final6 | 92 | 114 | IPR013087 | - | |
Spst10g01260 | 264 | MobiDBLite | consensus disorder prediction | 66 | 89 | - | - | |
Spst10g01260 | 264 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 146 | 166 | IPR013087 | - | |
Spst10g01260 | 264 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 94 | 114 | IPR013087 | - | |
Spst10g01260 | 264 | MobiDBLite | consensus disorder prediction | 108 | 129 | - | - | |
Spst10g01260 | 264 | Gene3D | Classic Zinc Finger | 90 | 166 | - | - | |
Spst10g01260 | 264 | MobiDBLite | consensus disorder prediction | 66 | 86 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst10g01260 | Spst-Chr10 | 13362790 | 13363584 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst10g01260 | 1 | 242 | C2H2 Transcription Factor Family | AT1G27730 | 43.750 | 2.15e-48 | 158 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Spst10g01260 | zf-C2H2_6 | 1.4e-11 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst10g01260 | - | - | vum:124819975 | 405.601 |