Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01254 ATGGAATCTTCTCAACAGATTTCTGAAGAATGGGGTTCTCTTTCTGGATTGCACACAACTGAAGAAGCTGACTTTATGGCTCAGTTGTTTGGTGGCACTAACTATTCTGTCACAGAAAAGCACTATGGAAATACCAGTTTTGGCTTTTTGACTGGCCATGAATCCTCAATAGCGACCATGCAAGGCACTAATAGCAACTCATACTTCCCTTCAAATGCTACAGATATTAACTTTTGTTTCTCACAAGGGAGTAGTTCCAGCACTGATAGTGGGAATAATATCTTTTCCACTACAAGTAGTGGAACCTACTCCTGTGATCCTGCAACAAACTTTGACTCTCTGCCCATGATTATTTGCATGGGAGACGCCCAATTTGTCTCCCATAGTTTTCAGTGTAATGACTACTCAGGCCAACAGATGAGTGAAAACACTGATGAAGAGTCAAGTCTAGACCCAGTGGCTCTAGCTGACAACAATTTGCTGGTTAAGAGGGACTATGAGATGATGGTTTCTGAACATGTACAAGAGGATAGAAGTGGAAACGTGGAGAACCTAACAAAAAGATTTAGGAGCTCAAAAGAGGTCTCAAAAACAATGAGGAATGCTAAGTTGAAGAAAAATTCAAAATCTGCTTCAATGAGCAAGGATGAAGATGATAGAACCTTGAACCTCCAAACGCGAGGCTGTTTTTCACAGGGTGACTCTAATGCTTCTCTGGAGCCAAATGGAGGGGCATCGAAAGATCATGCACCTCCCAATTTGCTTAGAAAATCAAGAGCAACTAACAGTCCTGCCACTGATCCACAGAGCCTTTATGCAAGAAAGAGAAGAGAAAGAATAAATGAAAGGTTGAGAATACTACAAAGTCTTGTCCCCAACGGAACTAAGGTGGATATCAGCACCATGCTTGATGAAGCAGTGCAATACGTTAAGTTTTTACAGCTACAAATTAAGCTTCTGAGCTCTGAAGATCTGTGGATGTATGCTCCAATTGTTTTCAATGGTATAAACATTGGACTTGACCTCAAACACTGCCCTGAAGCCAGAACTGGTGTTCATATACAAATGATTAATTGTGCCATCGTTTCATATGTGGATTATAGCCCAGATTTCCCAACTCAGCAATATGATAAAAAGCTGAACTGGGCACAAGAATCTCGCATTATATCGATCCACGTAATGCTTGCAAAATCTAAAACTGAAAACTGGGTTGAAATGGTGAAGAGAATGTGGTAG 1236 0.4086 MESSQQISEEWGSLSGLHTTEEADFMAQLFGGTNYSVTEKHYGNTSFGFLTGHESSIATMQGTNSNSYFPSNATDINFCFSQGSSSSTDSGNNIFSTTSSGTYSCDPATNFDSLPMIICMGDAQFVSHSFQCNDYSGQQMSENTDEESSLDPVALADNNLLVKRDYEMMVSEHVQEDRSGNVENLTKRFRSSKEVSKTMRNAKLKKNSKSASMSKDEDDRTLNLQTRGCFSQGDSNASLEPNGGASKDHAPPNLLRKSRATNSPATDPQSLYARKRRERINERLRILQSLVPNGTKVDISTMLDEAVQYVKFLQLQIKLLSSEDLWMYAPIVFNGINIGLDLKHCPEARTGVHIQMINCAIVSYVDYSPDFPTQQYDKKLNWAQESRIISIHVMLAKSKTENWVEMVKRMW 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01254 411 MobiDBLite consensus disorder prediction 173 201 - -
Spst10g01254 411 SMART finulus 270 319 IPR011598 GO:0046983
Spst10g01254 411 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 267 330 IPR036638 GO:0046983
Spst10g01254 411 CDD bHLH_AtIND_like 265 327 - -
Spst10g01254 411 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 264 313 IPR011598 GO:0046983
Spst10g01254 411 FunFam Basic helix-loop-helix transcription factor 265 322 - -
Spst10g01254 411 Gene3D - 268 328 IPR036638 GO:0046983
Spst10g01254 411 MobiDBLite consensus disorder prediction 224 242 - -
Spst10g01254 411 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 70 330 IPR045843 GO:0003700|GO:0006355
Spst10g01254 411 MobiDBLite consensus disorder prediction 173 274 - -
Spst10g01254 411 MobiDBLite consensus disorder prediction 209 223 - -
Spst10g01254 411 Pfam Helix-loop-helix DNA-binding domain 274 314 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01254 Spst-Chr10 13338280 13341146 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01254 10 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 37.634 6.10e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst10g01254 HLH 3.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01254 - - gmx:100816788 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00031 2 327284 332978 Spst10g01254 10 13338280 13341146 PCT