Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01253 ATGGATCCTACTGAGCAAATTTCTGAAGAATGGAGTTCTCTTAGTGGCTTTTACACAGCTGAGGAAGCTGACTTCATGAGCCAGTTGCTTGGCAACTGCTCACTCCCTGAAAACCTGTGTGGGAATTTCCATTTGGGAATTCCATCTGCAATATGGCCTGGTCATGAATCAACAATAGTGAGCGTGACAAGCATCAATGACAGTCCATATTTTCCTACAAATTCTGATAATAGTAATTATTTATGTTTTTCACAAGGAAGTAGCTCCACTTCTGATACTAGCAATATATTTCCTGCTTCAAGGGGTAACAAACACTGCTTGAATGACCCAGTAGCCAACATTGGTTACATGTCCATGGGCTTTGCCAAGTTCAGCCCATATAATGTTCAAGGGAGTGACATCCCGCAGATGAATGAAAACACTGATGAAGAGTTATGTCTAGAGGTTGTTGCTGACAAGAATTTGCATAATCACCAGGAATGTGAAGCAGCACCAGAGGATATAACCATCAATCTGGAGAAGTCAGGAAAGAGATCTAGGGGCTCTATGCTGCAGGTAAGAAAGAGCAAGAGAAACGCCAAATCCATGAAGAAACCAAAATCTGATTCTATAAGTAACTCTGAAGAGGGTAGAAGTCCTGATCTTCAGGATTGCTGCTCAGAGGATGATGACTCCAATGCATCTCAGGAGCTAAATGGAGGAGGATCTTCAAGTTTGAGCCTGGAGGATTCTACTTCTCTTAAGTTGAAGGGGAAAAAATCAACAGCTAATAGAGGTTCTGCTACTGATCCACAAAGTGTATATGCAAGGAGAAGAAGAGAAAGAATAAATGAAAGATTGAGAATCCTACAAAACCTTGTCCCAAACGGAACCAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTTTACAGCTCCAAATTAAGCTTCTGAGCTCTGATGATCTCTGGATGTACGCTCCTATTGCTTACAATGGAATGAACATTGGACTGGACCTCAATATTACCCCAACCAAACAGGCATAA 1041 0.4159 MDPTEQISEEWSSLSGFYTAEEADFMSQLLGNCSLPENLCGNFHLGIPSAIWPGHESTIVSVTSINDSPYFPTNSDNSNYLCFSQGSSSTSDTSNIFPASRGNKHCLNDPVANIGYMSMGFAKFSPYNVQGSDIPQMNENTDEELCLEVVADKNLHNHQECEAAPEDITINLEKSGKRSRGSMLQVRKSKRNAKSMKKPKSDSISNSEEGRSPDLQDCCSEDDDSNASQELNGGGSSSLSLEDSTSLKLKGKKSTANRGSATDPQSVYARRRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLDLNITPTKQA 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01253 346 MobiDBLite consensus disorder prediction 225 264 - -
Spst10g01253 346 FunFam Basic helix-loop-helix transcription factor 261 318 - -
Spst10g01253 346 SMART finulus 266 315 IPR011598 GO:0046983
Spst10g01253 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 260 309 IPR011598 GO:0046983
Spst10g01253 346 Gene3D - 263 323 IPR036638 GO:0046983
Spst10g01253 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 259 325 IPR036638 GO:0046983
Spst10g01253 346 Pfam Helix-loop-helix DNA-binding domain 270 310 IPR011598 GO:0046983
Spst10g01253 346 MobiDBLite consensus disorder prediction 181 195 - -
Spst10g01253 346 MobiDBLite consensus disorder prediction 169 270 - -
Spst10g01253 346 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 79 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01253 Spst-Chr10 13336002 13337514 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01253 10 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 40.108 1.71e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst10g01253 HLH 7.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01253 - - gmx:100817334 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01253 10 13336002 13337514 Spst10g01253 10 13336002 13337514 ECH