Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01240 ATGGCCAGTTTTGGAGGAACCACACAAAAGTGCATGGCTTGTGACAAAACGGTGTACCTTGTTGATAAGCTAACTGCGGATGGCCGTATCTTTCATAAGGCCTGCTTCAGATGCCACCATTGCCGCAATACCCTTAAACTGAGCAACTACTGTTCTTTTGAGGGGGTGCTATACTGCAGACCTCATTATGATCAACTCTACAAGCGAACTGGCAGCCTGGACAAAAGCTTCGAAGGAACACCAAAAATTCAAAAACCGGAGAAACTGGTCAATGATAATGAGAATGCTAAGGGCATCGCAAATGTGTTCTTGGGTACCAGAGACAAATGTGTGTGTTGCAAAAAGACAGTGTATCCCACCGAGAGGGTAACGGTTAATGGGACACCCTACCATAAGAGCTGCTTCAAATGTACCTATGGAGGATGTACTATTAGCTCATCAAACTTTATCACACACGAAGGAAAGCTCTACTGCAAACACCATCACATTCAACTTTTCAAAGAGAAGGGCAATTACAGTCAGCTCGAGAATGACCAAGTTGCTACCACTGAAATCTCTGCTTGA 564 0.4433 MASFGGTTQKCMACDKTVYLVDKLTADGRIFHKACFRCHHCRNTLKLSNYCSFEGVLYCRPHYDQLYKRTGSLDKSFEGTPKIQKPEKLVNDNENAKGIANVFLGTRDKCVCCKKTVYPTERVTVNGTPYHKSCFKCTYGGCTISSSNFITHEGKLYCKHHHIQLFKEKGNYSQLENDQVATTEISA 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01240 187 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Spst10g01240 187 PANTHER OS06G0237300 PROTEIN 2 88 - -
Spst10g01240 187 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 36 - -
Spst10g01240 187 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Spst10g01240 187 Pfam LIM domain 11 65 IPR001781 -
Spst10g01240 187 Pfam LIM domain 110 165 IPR001781 -
Spst10g01240 187 FunFam LIM domain and actin-binding 1 104 174 - -
Spst10g01240 187 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Spst10g01240 187 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Spst10g01240 187 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Spst10g01240 187 SMART lim_4 10 62 IPR001781 -
Spst10g01240 187 SMART lim_4 109 161 IPR001781 -
Spst10g01240 187 Gene3D Cysteine Rich Protein 6 75 - -
Spst10g01240 187 Gene3D Cysteine Rich Protein 105 174 - -
Spst10g01240 187 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Spst10g01240 187 FunFam LIM domain and actin-binding 1 5 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01240 Spst-Chr10 13206222 13207380 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Spst10g01240 LIM 3.1e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01240 K09377 - gmx:100306027 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01240 10 13206222 13207380 Spst10g01240 10 13206222 13207380 ECH