Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01222 ATGTATCCGAACCTATTTGGTTTAGAGTACATAACAACACCAGAAGCAGTGGCTGTTGGAGGAGATGGGGCTCTAGCATGGTTTGAATGGGAGAAAACCTTGACGGAGGAGCTCATGCAGAAAATTGTTTCAATCAGTGTTAGAAATTCTTCCTTCGACCTTTTCATGGCCATGGATTCAGGAGTAAAGAAAAGCTATGGCCGCCAAAAGATCGAGATGAAGAAAATGAGCAACGAGAGCAATCTCCAAGTCACCTTCTCAAAGCGCCGTAGCGGACTCTTCAAGAAGGCCAGTGAGCTTTGCACTCTCTGTGGTGCTGAGGTGGCACTTGTTGTGTTCTCCCCGGGAGAGAAGGTTTTCTCCTTCGGCCACCCCAACGTGGAGGCTGTGATCGACCGCTACCTCGCGCGGGCTCCACCTCACGACTTGGGTACCATGCAGTTCATCGAGGCCCACCGACTGGCTCACGTGCGTGAGCTCAACGCGCAGCTGACTCAGATCAACGCCCAGCTGGAGGCCGTGAGGCAGCGGGGAGAGGAGCTGAATGGTATGAAGAAGGACGCCCAGGCCCAGATGTGGTGGGCTCAGTCCATCGAGAAGATGAGCCCAGCACAGTTGGAGCAGTACAAGACGGCGTTGGAGGATCTGAAGAAACTGGTTGCGCGTCTTGCTGACAGGGCCATGCTGCAGAGTGCGACAAACCAGGGTCATCAGTTTTTCCCCGGGGCTCCTTCCTCTTCCAATCTGGTGCATCAGCCACACCCTCCTCAGTTGTTCCCCCCACCGCTGATGCAGCCACCCATGTTTCAGAACTTCATGTTTCCTGATGGGAGCATGGTAAGCCACCATGGGTTTAATCACATGGGAATGGGAGGATATGCACCTGGCCCTGGCCCTGGACCTGCTGGTGGTTTCTTTTGA 921 0.5407 MYPNLFGLEYITTPEAVAVGGDGALAWFEWEKTLTEELMQKIVSISVRNSSFDLFMAMDSGVKKSYGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAEVALVVFSPGEKVFSFGHPNVEAVIDRYLARAPPHDLGTMQFIEAHRLAHVRELNAQLTQINAQLEAVRQRGEELNGMKKDAQAQMWWAQSIEKMSPAQLEQYKTALEDLKKLVARLADRAMLQSATNQGHQFFPGAPSSSNLVHQPHPPQLFPPPLMQPPMFQNFMFPDGSMVSHHGFNHMGMGGYAPGPGPGPAGGFF 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01222 306 Gene3D - 144 239 - -
Spst10g01222 306 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 75 122 IPR002100 GO:0003677|GO:0046983
Spst10g01222 306 SUPERFAMILY SRF-like 67 140 IPR036879 GO:0003677|GO:0046983
Spst10g01222 306 ProSiteProfiles MADS-box domain profile. 66 126 IPR002100 GO:0003677|GO:0046983
Spst10g01222 306 Coils Coil 206 226 - -
Spst10g01222 306 Coils Coil 157 191 - -
Spst10g01222 306 CDD MADS_MEF2_like 67 135 IPR033896 GO:0000977|GO:0045944
Spst10g01222 306 PRINTS MADS domain signature 103 124 IPR002100 GO:0003677|GO:0046983
Spst10g01222 306 PRINTS MADS domain signature 68 88 IPR002100 GO:0003677|GO:0046983
Spst10g01222 306 PRINTS MADS domain signature 88 103 IPR002100 GO:0003677|GO:0046983
Spst10g01222 306 PANTHER MADS BOX PROTEIN 68 222 - -
Spst10g01222 306 FunFam Agamous-like MADS-box protein AGL62 78 143 - -
Spst10g01222 306 Gene3D - 78 143 IPR036879 GO:0003677|GO:0046983
Spst10g01222 306 SMART madsneu2 66 125 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01222 Spst-Chr10 12985578 12990814 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01222 62 247 Type I MADS-box Gene Family AT5G60440 54.497 4.57e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst10g01222 SRF-TF 1.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01222 - - gmx:100794751 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01222 10 12985578 12990814 Spst10g01222 10 12985578 12990814 ECH