Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01221 ATGGATTCGGGAGCGAAGAAAAGCCGTGGCCGTCAAAAGATCGAGATGAAGAAAATGAGCAACGAGAGTAACCTCCAAGTCACATTCTCCAAGCGCCGCAGCGGGCTTTTCAAGAAGGCCAGTGAGCTCTGCACCCTCTGCGGGGCCCATGTGGCGCTGGTGGTGTTCTCTCCCGGCGAGAAGGTGTTCTCCTTCGGCCACCCCAATGTGGACGCGGTGATCGACCGTTTTCTGGGGCGGGCTCCTGCTCCGGAGTCCGGCACCATGCAGTTCATTGACGCCCACCGCATCTCGAACGTGCGTGACCTGAACAAGCAGCTTACTCAGGTGAACGACCTGCTGGAGACGGAGAGGAAGCGCGGGGAGGAGCTGAACCGGTTGAGGAAGGAGGCGCAGGAGCTGATGTGGTGGACCCGCCCCACGGAGGAGCTGAGTGTGGAGCAGATGGAGCAGTACAAGGCTGCGTTGGAAGAGCTGAAGAAGCACGTGGCGCAACTTGCTGAGAGGGCCATGCTTCAGAATGCTGTAAACCAGGGTCATCAGTTTTTCCCTGGGGCTTCTTCCTCTGCCAATTTCGTGCCTCAGCCTCAGCCTCAGCCTCAGCCTCAGCTTCAGCCTCTGCCTCAGCCTCCTCAGGGGTTCAGTGCACCGACCCTTCCTACCATGCTTCAGAACTATATGTTCCCTGATTCAACCATGATGCAGCAGCACCACGGGTTCGATAACATGGGGATGGGAGGTTATGGACCTGGACCTGCTTCTGCGGGTGGTTTCTTCTGA 780 0.5808 MDSGAKKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAHVALVVFSPGEKVFSFGHPNVDAVIDRFLGRAPAPESGTMQFIDAHRISNVRDLNKQLTQVNDLLETERKRGEELNRLRKEAQELMWWTRPTEELSVEQMEQYKAALEELKKHVAQLAERAMLQNAVNQGHQFFPGASSSANFVPQPQPQPQPQLQPLPQPPQGFSAPTLPTMLQNYMFPDSTMMQQHHGFDNMGMGGYGPGPASAGGFF 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01221 259 Coils Coil 97 134 - -
Spst10g01221 259 SUPERFAMILY SRF-like 10 82 IPR036879 GO:0003677|GO:0046983
Spst10g01221 259 Gene3D - 87 182 - -
Spst10g01221 259 MobiDBLite consensus disorder prediction 1 22 - -
Spst10g01221 259 MobiDBLite consensus disorder prediction 195 215 - -
Spst10g01221 259 PANTHER MADS BOX PROTEIN 11 166 - -
Spst10g01221 259 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Spst10g01221 259 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Spst10g01221 259 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Spst10g01221 259 FunFam Agamous-like MADS-box protein AGL62 21 87 - -
Spst10g01221 259 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Spst10g01221 259 Coils Coil 142 169 - -
Spst10g01221 259 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Spst10g01221 259 MobiDBLite consensus disorder prediction 183 219 - -
Spst10g01221 259 MobiDBLite consensus disorder prediction 1 18 - -
Spst10g01221 259 CDD MADS_MEF2_like 10 78 IPR033896 GO:0000977|GO:0045944
Spst10g01221 259 Gene3D - 21 86 IPR036879 GO:0003677|GO:0046983
Spst10g01221 259 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01221 Spst-Chr10 12981664 12982443 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01221 5 189 Type I MADS-box Gene Family AT5G60440 59.043 8.78e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst10g01221 SRF-TF 2.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01221 - - pvu:PHAVU_007G047900g 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01221 10 12981664 12982443 Spst10g01221 10 12981664 12982443 ECH