Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01220 ATGTCGAAGGTTAAAAAGTCTAGCTTGGGTCGTCAAAAGATCCCAATAGAGAAAATACCTAAGAAGAGTCATTTGCAAGTTACCTTCTCCAAACGTCGTTCGGGACTGTTCAAGAAAGCTAGTGAACTTTGCACCCTCTGTGGGGTGGAGATCGCGATTGTGGTCTTCTCTCCCGCGGACAAGGCCTTCTCTTTTGGCCATCCAGAAGTTGAGTCCCTCATCGATCGCTACACCACGCGGAACCCTCCGCAAGAGTCCACTGCGCACCACCTCGTCGAGGCTCATCGGAATGCGAATGTTCGTGATCTCAACATGCAACTCACCCAGGTTTTTAACCTTTTGGAGATCGAAAAGAAACGAGGGGATGATCTGGATCATGCCAGAAAAGCCAGGCAGAGGCAATTTTGGTGGGAGGGCCCTGTTGAAGACCTTGGCTTGCCTGAGCTTTTCCAGTTAAAGGCCTCCATTGAAGAGCTCAAGAAGAACATAGAAAAACATGCTAGCAAATTCATGATTGAGCACTCTACTGCTATATCTTCTTCTTCTTCCTCCTCCTCAATTCTTGGACCTAATAATGGCTTTGGTGCACTTGCACGGTACGACGCCTTTGATAACAAACCTGATGTTGGGATTGGTATTGCTTCTTCACTTCCTGATGCCCAATATCTCGCATTTCGAACTGGGTATCTTTGA 693 0.4733 MSKVKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESLIDRYTTRNPPQESTAHHLVEAHRNANVRDLNMQLTQVFNLLEIEKKRGDDLDHARKARQRQFWWEGPVEDLGLPELFQLKASIEELKKNIEKHASKFMIEHSTAISSSSSSSSILGPNNGFGALARYDAFDNKPDVGIGIASSLPDAQYLAFRTGYL 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01220 230 Coils Coil 149 169 - -
Spst10g01220 230 FunFam Agamous-like MADS-box protein AGL62 21 87 - -
Spst10g01220 230 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Spst10g01220 230 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Spst10g01220 230 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Spst10g01220 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Spst10g01220 230 CDD MADS_MEF2_like 10 77 IPR033896 GO:0000977|GO:0045944
Spst10g01220 230 Gene3D - 90 183 - -
Spst10g01220 230 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Spst10g01220 230 PANTHER MADS BOX PROTEIN 11 166 - -
Spst10g01220 230 Gene3D - 21 89 IPR036879 GO:0003677|GO:0046983
Spst10g01220 230 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Spst10g01220 230 SUPERFAMILY SRF-like 10 90 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01220 Spst-Chr10 12966192 12966884 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01220 6 193 Type I MADS-box Gene Family AT5G60440 51.562 1.72e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst10g01220 SRF-TF 3.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01220 - - gmx:100793705 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01220 10 12966192 12966884 Spst10g01220 10 12966192 12966884 ECH