Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01194 ATGAACTCATCCATGGCTTGGTATCTCAAATATGTGATACCCTTTATCTTTTTTATCTCCCTCAACTTTACTGCAACCAGAGCACAGGGCCTTTCTTATGAGTACCAAGTTTGTTCAGCAAACCATTTCACTCCCAATAGCACTTTCCAGAGGCACCTCACAACCCTGTTCTCTTCCTTATCTTCCAAAGCCTCCAGCAATGTCCAATTCTTCAACAACACCGTCACGGGAACAAACTCCTCCGAGACAGTGTACGGACTATTCATGTGCAGAGGTGACATCCCCTCCGACATATGTAATAACTGCGTCGGAAACGCAACACAGCGACTATCCACACACCCAGACTGCATCTTGTCCAAAGCAGCAGTGGTGTATTACGATGAGTGCATAGTTCGGTATTCCAACCTTTCTTTCTTCTCCAGCCTAACCATGCTAGCCGGCTATGTCCTTCCGAACCCCACCAATATGACCAACCAAGAAAGCTTCAAGGCTTTACTGTATGACACCATGAACAAAACTGCGGATGACGCAGCCGATTATCCTACTGGTGCTAAAAAGTTCGCCACAACGGAAACAAACATAGACATATTTCAGAAGCTTTATTGTCTTGCTCAGTGCACACAAGACCTGTCTCCCGGAGATTGCAGAATATATTTTGGCATGGCTAGAATTGTTGATATAGATCAAAACCGTACAGAAACTGATCGAATTGTTGGAACGTATGGTTATATGGCACCAGAATATGCAATGCTCGGACAATTTTCGGAGAAGTCAGATGTTTTTAGTTTTGGAATCATGATTTTGGAGATTATTAGTGGTAAAAAGAATGCAAATTCTTACGTATCGCATCATGTTGATGAAGGCCTGATGACTAATGTTTGGAGAAATTGGACGGATCAAACACCATTGAGTATAGTGGATCCAAATATGAAAGAAAATGATTATGAAAGTGAAGTGATTCGATGCATTGAAATTGGGTTATTATGTGTTCAAGAGAATCCAAATGTGAGACCTACCATTGGAGAAGTAGTTTCTTATCTGAACGATCTCACACTTGAATTGCCATCTCCCCAAGAACCAGCATTCTTCTCTCATGGAATAAATGAAAAAGAGGCCATGCAGCAGGGATCACGTTCGATACCATTTTCTGTGAATGACATGTCTATTACTGACTTTTATCCACGATAA 1188 0.4175 MNSSMAWYLKYVIPFIFFISLNFTATRAQGLSYEYQVCSANHFTPNSTFQRHLTTLFSSLSSKASSNVQFFNNTVTGTNSSETVYGLFMCRGDIPSDICNNCVGNATQRLSTHPDCILSKAAVVYYDECIVRYSNLSFFSSLTMLAGYVLPNPTNMTNQESFKALLYDTMNKTADDAADYPTGAKKFATTETNIDIFQKLYCLAQCTQDLSPGDCRIYFGMARIVDIDQNRTETDRIVGTYGYMAPEYAMLGQFSEKSDVFSFGIMILEIISGKKNANSYVSHHVDEGLMTNVWRNWTDQTPLSIVDPNMKENDYESEVIRCIEIGLLCVQENPNVRPTIGEVVSYLNDLTLELPSPQEPAFFSHGINEKEAMQQGSRSIPFSVNDMSITDFYPR 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01194 395 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 31 138 - -
Spst10g01194 395 Pfam Salt stress response/antifungal 38 135 IPR002902 -
Spst10g01194 395 SUPERFAMILY Protein kinase-like (PK-like) 219 375 IPR011009 -
Spst10g01194 395 Gene3D Transferase(Phosphotransferase) domain 1 220 353 - -
Spst10g01194 395 ProSiteProfiles Gnk2-homologous domain profile. 144 253 IPR002902 -
Spst10g01194 395 ProSiteProfiles Gnk2-homologous domain profile. 31 138 IPR002902 -
Spst10g01194 395 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 219 391 - -
Spst10g01194 395 Pfam Protein tyrosine and serine/threonine kinase 219 346 IPR001245 GO:0004672|GO:0006468
Spst10g01194 395 Gene3D - 31 138 IPR038408 -
Spst10g01194 395 Gene3D - 145 219 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01194 Spst-Chr10 12693127 12696204 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01194 219 395 Receptor kinase-like Gene Family AT4G23140 50.802 1.79e-53 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Spst10g01194 PK_Tyr_Ser-Thr 1.8e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01194 - - vun:114191422 376.326