Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01173 ATGTCTGTTGCTACTCCAGTCAGTGGCTTGTTACCAAGGCATTCTAGAATAAGAGCGCGTGGCTTTGGAAGCATAAGGATTGGAAGCAATGAAAATCCACCACACAGGACATCCTCGGAGAGTGATTTGGGAAGGAACAAAGATGATGAAGCTGCCGGTAATGAGACAATGGAAGCTCCTTATTCATGTGAGAAGCAAGATTCTGACAAACGATCCAGAAAGAAGCGCTACCATCGCCATTCACATGATCAAATCATGGAGATGGAGTCATTCTTTAAAGAGTGCCCACATCCAGATGACAAACAAAGGAAAGAGCTGAGTCGCGAACTCGGGTTGGATCCCATGCAAGTCAAGTTCTGGTTCCAAAACAAGCGTACCCAGTCTCAACATGAACGCCATGAGAACAGTATTTTAAGGGCTGAGAATGACAAGCTTCGCGCAAACAACACTAGTTACAAGGAGGCACTAGCCAATGCTTCATGCCCTAGTTGTGGAAACCCTACTGCTCTTGGAGAAATGTCCTTTGACGAACAACAGTTGAATATCGAGAATACGCGATTAAGAGAAGAGATTCAAAAGATGTCAGCAATAATAGCCAAATGTGGTGGAAAACCTGCGAGTTCCTACCATAACATGCCATCTCAAAACCAGCTGATGTCTCCTCTCTCGTTTGATCAGGGAGTTGGAAACTACGGAGCACAGACAGCGATGGTAGGGGAAATGTTTGGTGGCAATGAACCTCTTAGGACACTCCTAATTACTAATGATTTTGACAAAGACATCGTTATGGAGATTGGTGGCGTAGCAATGCAGGAACTCACAGCGATGGCTGTGAATGGAAATCCTTTGTGGGTCCCTGCAAATGGCTATGAGATTCTGAATCAAGATGAATATCTGGTGTTATTCCCTAAGGGAATAGGTCCAACACCCTTGGGCGTAAAAGTTGAAGCTTCAAGGCATTCTGCAGTAGTCATCATGGATTGCAATAAACTCGTTGAGATCTTTATGGATGTGGATCAATGGGCAAACATGTTTTGCGGCATCATTTCAAGGGCAGTGTTACATCAAGTTCTGGAAATTGGTGGAAAAGAAATCTTGGATGGAGCCTGTCAAGTGATGTCAGCTGAGTTCCAAGTCCCATCACCGCTTGTTCCTATCCGTGACGACTGTTTCGTGAGGTTCTGTAAGAGGAACTCCAGAGAATCATGGGTGATTGTTGATTTTTCCGTGGATCAGCTGCGACCCAGTTCATTCACAAAAACCCGAAGACGACCATCTGGTTGCGTAATCACAGCATTGCCAAATGGTTACTCAAAGATTGTTTGGATTGAACATGTAGAACTGGACGATAATGAAGTGCATGATCTTTACAAAAACTATGTTAATTCTGGCCTTGCCTTTGGAGCTAAACGCTGGGTGGCATCCTTAGATAGACAATGCGAACGTCTTGCCAGTGCAATAGCCACCAACATACCCCAAGGGAGCATTGGTGTGTTTACCAATCTTGAAGGAAGAATAAGTACGATGAAGCTGGCTGAGAGAATGATGTTGAGCTTTTGTACTGGTGTTGGTGCTTCTACTGCAAATGCTTGGACACCGTTAACAGTTGGCAGTAAAGATGTGAGGGTCATGACCAGAAAAAGTGTGGATGATCCAGGCAGACCTTCCGGTACTGTGCTGAGCGCTGCAACTTCTTTGTGGCTCCCATTTCCTTCAAGGACTGTTTTTGATTTTCTGCGATCTGAATACTCAAGAAATCAGTGGGACATTCTCTCTAACGGAGGTCCAGTGCAAGAACTGGCACACATTGCCAATGGTCATGATACTGGCAACTGTGTCTCCTTGCTTCAAGTCAACACTGCGAATTCCAGCCAAAGCAATATGATTATACTTCAAGAGAGTTGCACTGATGCTACAGGCTCATTTGTAGTATATGCTCCTATTGATTTAGCTTCAATAAATATTGTGTTGAGAGGTGGAAATCCTGATTGTGTTGCCCTGCTGCCCTCGGGCTTTGCTGTTCTTCCTGATGGGCCTGAACTGATGAACAATGGAGGGCACATTCGTGAGGTTGGATCTGGAGGCTGCCTTCTGACAGTGGCATTTCAGATATTGGTTGATTCTATTCCAACCTCAAAACTCTCTGCTAGTTCAGTGACTACTGTTAGCAGTTTAATCAAGTGCACAGTTGAGCGGATCCAAGCTGCAGTTTGCAGTGGCGGAACCTAA 2229 0.4491 MSVATPVSGLLPRHSRIRARGFGSIRIGSNENPPHRTSSESDLGRNKDDEAAGNETMEAPYSCEKQDSDKRSRKKRYHRHSHDQIMEMESFFKECPHPDDKQRKELSRELGLDPMQVKFWFQNKRTQSQHERHENSILRAENDKLRANNTSYKEALANASCPSCGNPTALGEMSFDEQQLNIENTRLREEIQKMSAIIAKCGGKPASSYHNMPSQNQLMSPLSFDQGVGNYGAQTAMVGEMFGGNEPLRTLLITNDFDKDIVMEIGGVAMQELTAMAVNGNPLWVPANGYEILNQDEYLVLFPKGIGPTPLGVKVEASRHSAVVIMDCNKLVEIFMDVDQWANMFCGIISRAVLHQVLEIGGKEILDGACQVMSAEFQVPSPLVPIRDDCFVRFCKRNSRESWVIVDFSVDQLRPSSFTKTRRRPSGCVITALPNGYSKIVWIEHVELDDNEVHDLYKNYVNSGLAFGAKRWVASLDRQCERLASAIATNIPQGSIGVFTNLEGRISTMKLAERMMLSFCTGVGASTANAWTPLTVGSKDVRVMTRKSVDDPGRPSGTVLSAATSLWLPFPSRTVFDFLRSEYSRNQWDILSNGGPVQELAHIANGHDTGNCVSLLQVNTANSSQSNMIILQESCTDATGSFVVYAPIDLASINIVLRGGNPDCVALLPSGFAVLPDGPELMNNGGHIREVGSGGCLLTVAFQILVDSIPTSKLSASSVTTVSSLIKCTVERIQAAVCSGGT 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01173 742 ProSiteProfiles START domain profile. 255 485 IPR002913 GO:0008289
Spst10g01173 742 MobiDBLite consensus disorder prediction 22 83 - -
Spst10g01173 742 FunFam Homeobox-leucine zipper protein HDG1 62 145 - -
Spst10g01173 742 SUPERFAMILY Homeodomain-like 64 128 IPR009057 -
Spst10g01173 742 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 71 737 IPR042160 -
Spst10g01173 742 ProSiteProfiles 'Homeobox' domain profile. 71 131 IPR001356 GO:0003677
Spst10g01173 742 SMART HOX_1 72 135 IPR001356 GO:0003677
Spst10g01173 742 SMART START_1 264 482 IPR002913 GO:0008289
Spst10g01173 742 MobiDBLite consensus disorder prediction 38 54 - -
Spst10g01173 742 SUPERFAMILY Bet v1-like 504 734 - -
Spst10g01173 742 SUPERFAMILY Bet v1-like 256 484 - -
Spst10g01173 742 Coils Coil 123 155 - -
Spst10g01173 742 Gene3D - 61 145 - -
Spst10g01173 742 CDD START_ArGLABRA2_like 259 481 - -
Spst10g01173 742 Pfam START domain 269 482 IPR002913 GO:0008289
Spst10g01173 742 CDD homeodomain 73 128 IPR001356 GO:0003677
Spst10g01173 742 Gene3D - 304 484 IPR023393 -
Spst10g01173 742 Coils Coil 177 197 - -
Spst10g01173 742 Pfam Homeodomain 74 128 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01173 Spst-Chr10 12503588 12508644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01173 36 737 Homeobox Transcription Factor Family AT4G04890 61.983 0.0 892
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst10g01173 START 1.5e-44 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01173 K09338 - gmx:100793758 930.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01173 10 12503588 12508644 Spst10g01173 10 12503588 12508644 ECH
Spst10g01173 10 12503588 12508644 Spst2g00065 2 553106 556524 ECH
Spst5g00969 5 9294958 9296865 Spst10g01173 10 12503588 12508644 ECH
Spst2g00065 2 553106 556524 Spst10g01173 10 12503588 12508644 PCT