Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01172 ATGAGCAATGAGATCGCAATCGCCGCGCAGAAGCCTCCGCCGTCGATTCTCGTTGGCCGCTTCAAGGCACTCCTCAAGCAGCGCGACGACGAACTCAGGCTCGGCGCCAGCGTTCCCGTTCCCGTGCCGCCCCCGACCACCGACGAAATCGTCCAGATTTACGACCTCCTCTTGTCGGAACTCACCTGCAATTTGAAGCCTATCATCACTGATCTCACAATCATCGCCGAACAGCAGAGGGAGCACGCCAAAGGCATTGCTGACGCAATTTGCGCTCGGATTCTCGAGGTCCGTCTCCGTTGCCGCCGAACTTCTTCTTCTGCCTCTCCAAATTTGTATAATGTCATGGAATCGTTTTATTTGTTCGGAGATATGGGGAGTTCCTCACGCATTGTGGAGATCGGGTGCAACGTGTTTAAGGTGCCAGCAGATCAAAAGCTTCCCTCACTCTATTTGTTGGACAGTATTGTGAAGAATTTTGGGCAGGAATACATTAAATACTTCTCTTTTCGTCTGCCAGAAGTTTTTTGCGAGGCATACAGGCAGGTTCAGCCTAGTTTGCATCCTGCTATGCGGCATCTTTTTGGGACCTGGTCAAAAGTCTTTCCACCTTCTGTCCTACGCAAGATTGAAGCCGAGTTGCAATTTTCTCTAGCAGTTAATACTTCATCATCCACCCTGAATCCTGTCAGGGCTTCTGAATCTCCACGGCCTAGTCATGGCATACATGTTAATCCAAAATACTTGCGGCAGTTGGAGCGTTCAACTGTGGATAGTGTTGGTGCTGAAAAGATGGATTCATCAGGAAATGCTAATAATACAAACTTTGGCATCATAGCTAGTAAGACACATCAATTTTTATCAGGCAGTAGCAGGCTTGGTATTTCCTCGTCCCCTTCAAGAATTGGACTCGATAGGCCTTTGTCTGCATCTATGGATGAATATGCAACTGACAGTTCTGCTAACAGATTAATTGAGAGAGACACTCCTCATCCTGCTGTTGATTATGGAGTAGGCAAGGCATTGGGTAGAGATGTGGAGTTGAGTGAATGGCAACGAAAGCAGTATGCTGGTGATGGTTGGAATCGATTTCCAACATCTATCACATACAGCCTTAGTAATGGACATCAGCGTCAAAGTCCAAGAGCTTTAATTGATGCATATGGCAGTGACAAAAGTCAAGAAACTTCAAGTAAGTCTTTGCTAGTTGAACGGATGGATAGAAATGGTATAGACAACAAAGTATTGCCAACATCATGGCAGAATACTGAAGAGGAGGAGTTTGATTGGGAAGATATGAGTCCAACCTTAACAGACCTTAATAGGAATAACAGTTTATTGCCTTCAACTATTGGATTCTCCAGGGAAAGGCCTGTTGCTGCAGCTAATGCAGCTTTGTCAGAGCATGATTCCAGGAAAGGGGTTTGGTCAAGTGGATCTCAGCTTCCTCCAGTGGATGATTCTTCTGCCATAGCAGAAGATGCATTTACTTCTTTGGGGGTTTGTTTGGACAACAGCAAGATCATAGAAGTTGGGTTGCCACAGCCTCTAGTTCTAGGCCTTCAAGCCCTAAGGGATAAGATAAAGGGAGTTATACATAAGAAGAATGTGGTGATGAAGAGATACACATGTAGCTTTCGGCCAGCACCCCTGGGTCAGGTGCCTGGATTCCAAAATCGTAGTCTGAGCTCTTCTCAACCTCATGATGCTTGGAAGATTGCACATCATCCGGCCAACTCATCACAACATATCTTTAGTAATAGGGGACGAGCAAGAAGTCATACTATTCCTCCTATTGATAACATTCACAATGCAGATGCAATCCCGTATCGAGTTCGACCTGCAGTGTCAAGGATGGTTTCTGGCCGCGTCTCTAATGTCGAACATAGACCATCAGTTTTGGCTGCAACTCTTGAAATAAGGCCTTCTGTAAATTTGAATATCACTCGACCACCCTTAAATCCAATAATTCCATTACAAAAACATGTCAGGAGTCAGTTTGAAGCTATACATACTAGTAGCCCTATTGTGAATCATGTTGTAAATAAATCGTCACTTATGCCAGAGCAGTCATTTGACAGTGTCGAGAACAAGGATGCAAGTATTTTGAAGATACATCAGTTGCCTAATCAGCTTCCTGGGCTAGTTTCGTCCAACCAGCAAAATCATGGGCAAGCACCACAACTGCAGTTTTATCCACCCTCTCAGGATCCCTTAAACACACAATTTAGTCATGGGAGTAATTTGCAGGGACATGGTGCTTCTATAAGTACTGCCATGTCGAATCCATTGCCTGTCATGCAATTCCCTTTGCCACTCCAAAGTATTGCAAATAATCCTTTATTACAGGGTGGAGCCCGTCCACCTTTACCTCCAGGGCGCCCTCCTGCTCCATCTCAAATGATACCTCATCCGAATGCCCGTCCATTTATGTCAAGCCAACAGCCAACTGTTGGATATACTAATTTAATTAGTTCTCTAATGTCTCAAGGTGTGATCTCATTGGCTAACCAGCTGCCAGGACAGGATTCTGTTGGAACTGAGTTTAATCCAGATATTCTGAAGCTTCGTCATGAGTCTGCTATCAATGCCTTGTATGGTGATCTCCCAAGACAATGCACAACTTGTGGGCTCCGATTCAGATGCCAAGAGGAACACAGTAGTCATATGGATTGGCATGTGACTAAGAATAGGATGTCTAAAAGCCGGAAGCAGAAACCCTCTAGGAAGTGGTTTGTAAGTGACAGGATGTGGCTTAGTGGTGCAGAGGCATTGGGAACAGAGTCAGTTCCAGGTTTTTTGCCAACAGAAACCATAGAAGAAATGAGAGATGATGAAGAGTTGGCAGTTCCAGCAGAAGAGGACCAAAATACATGTGCATTATGTGGAGAGCCTTTCGATGAGTTTTACAGTGATGAAATGGAGGAATGGATGTATAGAGGAGCTGTATACCTCTATGCTCCCACGGGGACAACAGCAGGCATGGACAGGTCACAGTTAGGCCCTATAATTCATGCTAAATGCAGATCAGAATCTAATATGGAACCATCTGAAGATCTTGGGCTGGATGAAAAGGTTTCTGGTTTGGTGGATCCTAAATTGCGAATGAAACATTCAGAAATACTTGTGCTGTGGGAGTGCGCTCTACTGTGGATTATGCTTTTGTCTGCATCAATGGAAGGAAATGCAGTTCACGCTTGTGGTGGCATGTTAACTGAGAGATACTCTCCTCGTCCTGTAGTTGATTATGGAGTGGCCAAAGAATTAGGTAGATGTGTGGGAATGGGTGAAAGCCAAGGAATGCAGTACAGCCCTACAAATGGATATCAGATTGAAATGTCAAGAACTTTAGTTCATGCATATGGCACTGAGAAAAGCCTAGAATGTCGGAGCAGTAAACCATTTTTAGTTGAACAGAAGGATAGAAACTGCATAGACAATAAAATGTGGTCAAAATCATGGCAGGACACTGAAGAGAAGGAGTTTGATTGGAATGATATTAAGCCAACTTTGATAGACCATAGTAGGAATAACAGTTTAACACCTTCAACTGTTGGTTTCTCCACGCAAACACCTGTTGTCGCAGTTAATACAACTTTGTCAAAGCAAGATGCTGCCTGGAATGGTTGGTCTCATGGATCCCGGTTTCCTCCACTCAATAATTCATCTGCTATGGCGATTCCTCATCATTTTTCTAACTCGTCACAACATAACTTGGATCAAGCAAGGACTCTTACGAACCCTCAAATTACTGACATTCGCAATAATGTGAAACCTCCATCATCAGTTGCGCCACCATCTTTTGAAAGAGCACCTTTTGTAAATCAGAACGTCAATTCGTTTGTGCCAGCACAGTCATATGGCAGTGTTGAGAACAAGGATGCAAGTATTACAAAGATGCATCAGTTCCCTAAGAAGCTCCCTGGACATATTTCTTTCAACCAGAAAAATCACTGGCAAGCACCACAGCCGCAGTTATTTCAGTTTCAGGATCCATCAACCTCACATTTTAGTCATGGGATGAGTTCTTGGCAGGGATACGGTGCTTCTACAAGTACAGCCATGTTGAATCCGTTTCCTGATATGCAATCCCCTTTACCACTCCAAAGTATTGCAGAGTACCCTTTACATGCAGGTCACCCTCCTGCTTCGCCTCAGATGATGACACCTCCAACAAATATTGATAAATTTCTGTCAACCCAACAGCGACCTGTTGGATACACCGATTTACTTACTTATCTAATGTCTCAAGGTATCATCTCATTGGATAAACTGCGGCCAGCACAGAATTCTATTGGAACCGAGTTTAATGCAGACATTCTTAAGGTTCGGCGCGAGGAGTGA 4344 0.4431 MSNEIAIAAQKPPPSILVGRFKALLKQRDDELRLGASVPVPVPPPTTDEIVQIYDLLLSELTCNLKPIITDLTIIAEQQREHAKGIADAICARILEVRLRCRRTSSSASPNLYNVMESFYLFGDMGSSSRIVEIGCNVFKVPADQKLPSLYLLDSIVKNFGQEYIKYFSFRLPEVFCEAYRQVQPSLHPAMRHLFGTWSKVFPPSVLRKIEAELQFSLAVNTSSSTLNPVRASESPRPSHGIHVNPKYLRQLERSTVDSVGAEKMDSSGNANNTNFGIIASKTHQFLSGSSRLGISSSPSRIGLDRPLSASMDEYATDSSANRLIERDTPHPAVDYGVGKALGRDVELSEWQRKQYAGDGWNRFPTSITYSLSNGHQRQSPRALIDAYGSDKSQETSSKSLLVERMDRNGIDNKVLPTSWQNTEEEEFDWEDMSPTLTDLNRNNSLLPSTIGFSRERPVAAANAALSEHDSRKGVWSSGSQLPPVDDSSAIAEDAFTSLGVCLDNSKIIEVGLPQPLVLGLQALRDKIKGVIHKKNVVMKRYTCSFRPAPLGQVPGFQNRSLSSSQPHDAWKIAHHPANSSQHIFSNRGRARSHTIPPIDNIHNADAIPYRVRPAVSRMVSGRVSNVEHRPSVLAATLEIRPSVNLNITRPPLNPIIPLQKHVRSQFEAIHTSSPIVNHVVNKSSLMPEQSFDSVENKDASILKIHQLPNQLPGLVSSNQQNHGQAPQLQFYPPSQDPLNTQFSHGSNLQGHGASISTAMSNPLPVMQFPLPLQSIANNPLLQGGARPPLPPGRPPAPSQMIPHPNARPFMSSQQPTVGYTNLISSLMSQGVISLANQLPGQDSVGTEFNPDILKLRHESAINALYGDLPRQCTTCGLRFRCQEEHSSHMDWHVTKNRMSKSRKQKPSRKWFVSDRMWLSGAEALGTESVPGFLPTETIEEMRDDEELAVPAEEDQNTCALCGEPFDEFYSDEMEEWMYRGAVYLYAPTGTTAGMDRSQLGPIIHAKCRSESNMEPSEDLGLDEKVSGLVDPKLRMKHSEILVLWECALLWIMLLSASMEGNAVHACGGMLTERYSPRPVVDYGVAKELGRCVGMGESQGMQYSPTNGYQIEMSRTLVHAYGTEKSLECRSSKPFLVEQKDRNCIDNKMWSKSWQDTEEKEFDWNDIKPTLIDHSRNNSLTPSTVGFSTQTPVVAVNTTLSKQDAAWNGWSHGSRFPPLNNSSAMAIPHHFSNSSQHNLDQARTLTNPQITDIRNNVKPPSSVAPPSFERAPFVNQNVNSFVPAQSYGSVENKDASITKMHQFPKKLPGHISFNQKNHWQAPQPQLFQFQDPSTSHFSHGMSSWQGYGASTSTAMLNPFPDMQSPLPLQSIAEYPLHAGHPPASPQMMTPPTNIDKFLSTQQRPVGYTDLLTYLMSQGIISLDKLRPAQNSIGTEFNADILKVRREE 1447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01172 1447 Gene3D - 44 215 IPR008942 -
Spst10g01172 1447 MobiDBLite consensus disorder prediction 781 802 - -
Spst10g01172 1447 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 43 1026 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Spst10g01172 1447 SUPERFAMILY ENTH/VHS domain 138 214 IPR008942 -
Spst10g01172 1447 ProSiteProfiles CID domain profile. 46 218 IPR006569 -
Spst10g01172 1447 SMART 558neu5 49 215 IPR006569 -
Spst10g01172 1447 ProSitePatterns Zinc finger C2H2 type domain signature. 873 893 IPR013087 -
Spst10g01172 1447 Pfam CID domain 67 209 IPR006569 -
Spst10g01172 1447 CDD CID_Pcf11 54 215 IPR047415 -
Spst10g01172 1447 SUPERFAMILY ENTH/VHS domain 46 97 IPR008942 -
Spst10g01172 1447 MobiDBLite consensus disorder prediction 785 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01172 Spst-Chr10 12467972 12480712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01172 17 458 C2H2 Transcription Factor Family AT4G04885 45.964 1.19e-91 314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01172 10 12467972 12480712 Spst10g01172 10 12467972 12480712 ECH