Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01160 ATGCCAGAACATCAACATCTCATTGTTGACAGTGGTGCCTTAATTCATCTTGTTGATCTTTTGAAGAGGCACAAGAATGGCTTAACGTCTCGTGCTATTAATAGTCTCATTCGTAGGGCTGCGGATGCTATTACTAATCTTGCTCATGAAAACAGCAGCATTAAAACTCGTGTCAGGATGGAAGGTGGAATTCCACCACTTGTTCATTTGCTTGATTTTGCTGATGCAAAGGTACAAAGAGCAGCTGCTGGTGCTCTACGAACTCTGGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCTCTTCCAACTTTGATTTTAATGCTACGTTCTGAAGATGCTGCTGTTCACTATGAAGCGGTTGGTGTGATTGGAAATCTCGTCCACTCTTCACCTAATATAAAGAAAGAAGTTCTTCTTGCTGGAGCTTTACAGCCAGTTATTGGATTACTTAGTTCCTGCTGCTCTGAAAGCCAGAGAGAAGCAGCCTTGTTACTTGGACAATTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCTGTCCAACCCTTAATAGAAATGCTTCAGTCGTCTGATGTACAACTCAGGGAAATGTCTGCTTTTGCATTGGGGAGATTAGCCCAGGATGCACATAACCAGGCTGGTATTGCTCAAAATGGTGGCTTAGTGCCATTGCTCAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTCATTAGGGTAGGTGGAGTTCAGAGACTGCAAGATGGGGAATTTATTGTTCAAGCAACCAAAGATTGTGTAGCCAAGACATTGAAAAGATTAGAGGAGAAGATTCAGGGGCGTGTGCTGAACCATTTATTATATCTCATGCGAGTTTCAGATAAGGGTTGTCAAAGACGAGTTGCTTTGGCTCTTGCGCATCTTTGTTCTCCAGATGATCAGAGAAAAAATTTTATTGATCACCACGGTCTTGAGTTGCTTATTGGGCTTCTTGTCTCATCCAGCTCTAAGCAGCAACTTGATGGTGCTATGGCTTTATGCAAGTTGGCTAATAAAGCCTCGACCTTGTCTCCTGTGGATGCTCCTCCTCTTTCTCCAACACCACAGGTCTATTTAGGAGAGCAGTATGTAAACAACTCTACATTGTCTGACGTTACATTTTTGGTTGAAGGCAAGCGATTTTATGCACATAGAATTTGTCTACTTGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTACAGGGAGAAGGAGGCAAGGGACATAGAGATTCCAAATATTAGATGGGAGGTTTTTGAGTTGATGATGAGATTTGTGTATTGTGGATCAGTTGAGCTCACTCTGGATATTGCTCAAGATCTTCTTCCAGCAGCTGATCAATATCTTTTGGAAGGACTTAAGAGACTCTGTGAGTACACAATTGCACAGGATATATCACTAGAGAATGTTTCAAGTATGTACGAACTTTCAGAAGCCTTCAATGCAATATCACTGCGGCATGCATGCATCCTTTTTATCTTGGAGCAATTTGATAAATTGAGTGCAAGGCCAGGGCACACTCTTCTGATTCAGCGTATAATACCAGAGATCCGCAATTACTTTGTTAAAGCTCTTACAAAAGCCAACTCCCATAACAACCGATTGTAG 1719 0.4148 MPEHQHLIVDSGALIHLVDLLKRHKNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLDFADAKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAVHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVQPLIEMLQSSDVQLREMSAFALGRLAQDAHNQAGIAQNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIQGRVLNHLLYLMRVSDKGCQRRVALALAHLCSPDDQRKNFIDHHGLELLIGLLVSSSSKQQLDGAMALCKLANKASTLSPVDAPPLSPTPQVYLGEQYVNNSTLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFELMMRFVYCGSVELTLDIAQDLLPAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAISLRHACILFILEQFDKLSARPGHTLLIQRIIPEIRNYFVKALTKANSHNNRL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01160 572 Gene3D - 1 161 IPR011989 -
Spst10g01160 572 Gene3D Potassium Channel Kv1.1; Chain A 394 531 IPR011333 -
Spst10g01160 572 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 229 271 IPR000225 GO:0005515
Spst10g01160 572 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 188 230 IPR000225 GO:0005515
Spst10g01160 572 Gene3D - 162 286 IPR011989 -
Spst10g01160 572 Pfam BTB/POZ domain 398 500 IPR000210 GO:0005515
Spst10g01160 572 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 104 146 IPR000225 GO:0005515
Spst10g01160 572 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 2 567 IPR044282 -
Spst10g01160 572 Gene3D - 287 387 IPR011989 -
Spst10g01160 572 ProSiteProfiles BTB domain profile. 405 472 IPR000210 GO:0005515
Spst10g01160 572 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 62 97 IPR000225 GO:0005515
Spst10g01160 572 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 12 62 IPR000225 GO:0005515
Spst10g01160 572 CDD BTB_POZ_ARIA_plant 392 507 - -
Spst10g01160 572 SMART BTB_4 405 502 IPR000210 GO:0005515
Spst10g01160 572 SMART arm_5 135 175 IPR000225 GO:0005515
Spst10g01160 572 SMART arm_5 177 217 IPR000225 GO:0005515
Spst10g01160 572 SMART arm_5 333 373 IPR000225 GO:0005515
Spst10g01160 572 SMART arm_5 93 133 IPR000225 GO:0005515
Spst10g01160 572 SMART arm_5 1 49 IPR000225 GO:0005515
Spst10g01160 572 SMART arm_5 218 258 IPR000225 GO:0005515
Spst10g01160 572 SMART arm_5 51 91 IPR000225 GO:0005515
Spst10g01160 572 Pfam Armadillo/beta-catenin-like repeat 93 132 IPR000225 GO:0005515
Spst10g01160 572 Pfam Armadillo/beta-catenin-like repeat 58 90 IPR000225 GO:0005515
Spst10g01160 572 Pfam Armadillo/beta-catenin-like repeat 177 216 IPR000225 GO:0005515
Spst10g01160 572 SUPERFAMILY POZ domain 397 499 IPR011333 -
Spst10g01160 572 SUPERFAMILY ARM repeat 36 374 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01160 Spst-Chr10 12311650 12318096 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01160 67 270 U-box Gene Family AT3G46510 28.571 1.00e-13 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Spst10g01160 BTB 2e-24 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01160 - - gmx:100784348 1053.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01160 10 12311650 12318096 Spst10g01160 10 12311650 12318096 ECH