Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01097 ATGGACACACCAGATAGGAGCAAGATCAACAATCCTCTTTCGCAGTTTGAGGATTCACCTGTATTTAACTATATCAGTAATCTATCTCCTATAGAACCTGTTAAGTCTGTTCACATTACTCAGACATTCAATTCGCTAAGCTTTTCATCTCCTCCATCTGTTTTCACATCACCCCATGTCAACTGTCACAGGGAATCCAGATTCCTCAGGAGGCATAACCTTTTGGACGCATCTAAACCTAAAGTTTCATCCGAAGATATCAATAATGTTTATTCATGTGAAAAGACTCCCGCAGATTCTACTCAACCATGTCATGAATCAAGTGAACCACAGGAAAATACCAATCCAAATATTTCCACAAGAGATGCCTCAATTGAGCCATGTAATGAAAACCTGAATATCTCAATTGAGCTTCCACAAGGCTTGAAATATAATTTGGCTAGTCCAGGGTATGATCCTGTTCTCTCTGCTGATGAAGCTGACTCTCTTTTGGAACTGCCGGGCAAGCCAGGATCAGATGTTGCCTATATTCCAGAAGGCTCTGAAAAGGATTCAATCGAGGGTGAAATGCATCGTCCAGGTTTATGTCATAATGAGGAAAAAATTGAAGGCCCAGATTGTGGTGTGGATGATTTAATTACTGAAGCTTCTGAACTGTTAATGTTTAGCCCCCCAAATGTGACAGATTCTTTTAAGGATATAAATAAACAATTAAATCCTTCAACACAGCTTACCAATTATAGGACTTTGTTACCACAATCTGACATCAATGATGGTCAACAAATGCACAGTGTTAATGCCATTGCTTCTGGTTCAGAACATGAAATTGAAAATCATTCTTCTGAATCAGCAGCAGCCACAGACACAGGTCAGAGACAGGATAATCATGACAATGTTGCTTTGGTGGCTAGCAATCCAAATGAGAAAATGGATGATAAGCTTGTTTATGTGACACACCGAGGTATCCGGAGACGCTGTTTAGATTTTGAGATGGCCAGTGTGCAAAGGAAGAGCATAGATGGTAAATTGAACACCAATTCCAGTACAAAAAAATCTGATGAGATGAATGTTGGTAAAGGAAAGCAACTGCTCCCTACAAAACATAGTGGGGATTCCCGGAAGTGTGTTTTGCCTGGAATTGGTTTGCACTTGAATGCACTTGCAACTTTAAATGATTGCAAAAACATAAAAATTGAGAAGTTGTTATCTGGAAGGCAACCTAATATGCCCAGCTCCTCTTCATCCTCCCAACTTTCTGCAAGCCAAGAACATCAACTATCATTGTTACCTGCATCAGTGGAAAAAGATTTGGAGCCATCAGAGAATGAGGTTCAACCTGGTGAAGATTGTACCGAATCTTTAGTTCACATGGCTGGTGAAGATTTCCAGCAGAATAGTCCGAAAAAGAAAAGGCAAGTACAATTGCGCAAGTTGGAACCAGATGGGGAAGGGGAGTCTTGCAAGCGATGTAATTGTAAGAAATCAAAGTGTTTGAAGCTTTATTGTGAGTGCTTTGCTGCGGGAGTCTACTGCATAGAGCCTTGTTCATGTCGTGATTGCTTCAACAAGCCTATTCATGTTGATACTGTTCTTCAAACGCGCCAGCAGATTGAGTCTCGAAATCCACTTGCATTTGCTCCTAAAGTCATACGGAGTTCTGATTCTGTACCTGAAATTGGGGATGACCCTAACAAAACTCCAGCTTCAGCACGACACAAAAGAGGATGTAATTGCAAGAAATCAAGCTGCCTAAAGAAATACTGTGAATGTTATCAGGGTGGTGTTGGTTGCTCCATAAGCTGCAGATGTGAAGGATGCAAGAACACATATGGTAGAAAGGATGGTTCTGTTCCTTCAGGAATAGAAGCCAAGCCCGAAGAAGAAACAGAAGTATGTGAAAAGGGTGTGATGGAAAATGCTTCACAGAAAATTGAAGCACACAATACCGAAGACCATCCAGAACATGCTCTTCCTACAACACCATTACGTATTTCCAGATCATTGCTCCCATTACCCTTTTCTTCTAAGGGTAAGCCACCAAGATCTTTTGTTACTACCATCTCTAGTTCCGGATTGTTTGTTAGCCAAAAGCTCGGGAAATCAAGTGCTCCACGGTCTCAACCTAAATTTGAAAAGCCTTTGCAAACCGTGCCGGATGATGACTCTCCTGTGACCTGCATCAAAACTTCTTCTCCAAATGGCAAGAGGATCTCCTCTCCTAATTGTGACGTGGGATCATCTCCTACTCGCAGAGGTGGGAGGAAGTTGATTTTACAATCGATTCCTTCGTTTCCTTCTCTCACCCCTCACAATCTTCGGAGTGACTGA 2328 0.4158 MDTPDRSKINNPLSQFEDSPVFNYISNLSPIEPVKSVHITQTFNSLSFSSPPSVFTSPHVNCHRESRFLRRHNLLDASKPKVSSEDINNVYSCEKTPADSTQPCHESSEPQENTNPNISTRDASIEPCNENLNISIELPQGLKYNLASPGYDPVLSADEADSLLELPGKPGSDVAYIPEGSEKDSIEGEMHRPGLCHNEEKIEGPDCGVDDLITEASELLMFSPPNVTDSFKDINKQLNPSTQLTNYRTLLPQSDINDGQQMHSVNAIASGSEHEIENHSSESAAATDTGQRQDNHDNVALVASNPNEKMDDKLVYVTHRGIRRRCLDFEMASVQRKSIDGKLNTNSSTKKSDEMNVGKGKQLLPTKHSGDSRKCVLPGIGLHLNALATLNDCKNIKIEKLLSGRQPNMPSSSSSSQLSASQEHQLSLLPASVEKDLEPSENEVQPGEDCTESLVHMAGEDFQQNSPKKKRQVQLRKLEPDGEGESCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCRDCFNKPIHVDTVLQTRQQIESRNPLAFAPKVIRSSDSVPEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNTYGRKDGSVPSGIEAKPEEETEVCEKGVMENASQKIEAHNTEDHPEHALPTTPLRISRSLLPLPFSSKGKPPRSFVTTISSSGLFVSQKLGKSSAPRSQPKFEKPLQTVPDDDSPVTCIKTSSPNGKRISSPNCDVGSSPTRRGGRKLILQSIPSFPSLTPHNLRSD 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01097 775 SMART CXC_2 571 612 IPR033467 -
Spst10g01097 775 SMART CXC_2 485 526 IPR033467 -
Spst10g01097 775 ProSiteProfiles CRC domain profile. 486 611 IPR005172 -
Spst10g01097 775 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 770 IPR044522 GO:0003700
Spst10g01097 775 MobiDBLite consensus disorder prediction 93 124 - -
Spst10g01097 775 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 574 609 IPR005172 -
Spst10g01097 775 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 488 523 IPR005172 -
Spst10g01097 775 MobiDBLite consensus disorder prediction 722 746 - -
Spst10g01097 775 MobiDBLite consensus disorder prediction 698 753 - -
Spst10g01097 775 MobiDBLite consensus disorder prediction 405 425 - -
Spst10g01097 775 MobiDBLite consensus disorder prediction 271 293 - -
Spst10g01097 775 MobiDBLite consensus disorder prediction 404 425 - -
Spst10g01097 775 MobiDBLite consensus disorder prediction 340 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01097 Spst-Chr10 11719251 11724265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01097 12 770 CPP Transcription Factor Family AT3G22780 42.730 7.53e-153 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Spst10g01097 TCR 2.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01097 - - var:108326442 1340.87