Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01086 ATGGCAGTTGGAAAAAATAAGAGGATTTCTAAGGGAAAGAAGGGCGGCAAAAAGAAGGCAGCGGATCCCTTTGCCAAGAAGGATTGGTACGATATCAAGGCCCCTTCTGTATTTCAGGTCAAGAATGTAGGCAAGACTCTCGTCACCCGTACACAAGGCACAAAGATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTATCATTGGCTGATCTTCAAGGAGATGAGGATCATGCATTCAGGAAGATTAGGTTGAGAGCTGAAGATGTACAAGGGAAGAATGTTCTGACAAATTTCTGGGGAATGGATTTCACCACTGACAAGCTGAGGTCATTGGTTCGTAAATGGCAAACTCTTATTGAATCCCATGTTGATGTGAAGACAACTGATAATTACACATTGAGGATGTTTTGTATTGGATTTACCAAGAGAAGAGCTAACCAGGTGAAGAGGACCTGTTATGCACAATCAAGCCAGATTAGACAGATTCGTAAGAAGATGAGAGAGATTATGACCAACCAAGCAACATCCTGTGATTTGAAGGAGTTGGTACGAAAGTTTATTCCTGAGATTATTGGAAAGGAGATTGAGAAGGCAACATCCAGTATTTACCCTCTGCAGAATGTTTTTGTTCGAAAAGTCAAGATCCTCAAAGCTCCTAAGTTTGATCTTGGGAAACTGATGGAGGTTCATGGTGATTATTCAGAAGATGTTGGTACAAAGGTAGATAGACCTGATGAAACAATTGTTGAGGAACCAACGGAAATAATTGGAGCTTGA 783 0.4112 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQGDEDHAFRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIESHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRKKMREIMTNQATSCDLKELVRKFIPEIIGKEIEKATSSIYPLQNVFVRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVDRPDETIVEEPTEIIGA 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01086 260 Hamap 40S ribosomal protein S1 [RPS3A]. 1 260 IPR027500 GO:0003735|GO:0005840|GO:0006412
Spst10g01086 260 MobiDBLite consensus disorder prediction 1 15 - -
Spst10g01086 260 MobiDBLite consensus disorder prediction 1 20 - -
Spst10g01086 260 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 252 - -
Spst10g01086 260 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
Spst10g01086 260 SMART Ribosomal_S3Ae_2 15 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Spst10g01086 260 Pfam Ribosomal S3Ae family 16 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01086 Spst-Chr10 11606470 11608862 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01086 1 260 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 86.260 3.99e-163 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01086 K02984 - gmx:100818730 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01086 10 11606470 11608862 Spst10g01086 10 11606470 11608862 ECH