Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01085 ATGGCCTCTCATTCTCCCAAGAGAAAAGGCCCTTATCTTAATGTACTATCCCAACTCTCCCTCCTTGTAATTATCATCTCCTTCGTCAACCCTTCACATCAAGCAGAACACCATTCTCCCCCTCTCCCCCCTCTAAACCCAAGGCTTTCCAAAGCTTACGTAGCACTCCAAGCATGGAAACACAAAATCACATCAGATCCTAAGAACTTCACCTTAAACTGGTGTGGCCCCAATGTTTGCAGCTACACTGGGATATACTGTGCACCTGCCCCAGATGACCCTCACATCTATACTGTTGCTGGAGTTGACCTAAACCATGCAACCATATCTGGTTCCTTGCCAGAAGAACTAGGTCTCTTAACTGACCTAGCACTTTTCCACATAAACTCCAACCGCTTCTGTGGCTCACTCCCCAATAGCTTCAACCAGCTGAATCTCCTCCATGAACTAGACATTAGTAACAACAAATTCTCAGGACCATTCCCCGAGGTTCTTCTCTGCATCTCTTCGTTAAAATACTTGGACATCAGATTCAATGACTTCTATGGCAACATTCCCTCGCGCCTCTTCGACCTTAAACTCGATGCCCTTTTCATCAACAACAACAACTTCAAATTCTCCCTACCTGAGAATTTCGGGAACAGCCCTGTTTCTGTTGTTGTGTTTGCAAACAATGACCTCAAGGGGTGTCTCCCTCCGAGTTTGACCAAAATGAAGGGTACCCTTAACGAGATTATCATCACCAACAGTGGTTTAACGGGTTGTTTGCCTAGTGAGATAGGGGATTTGGACAAAGTGACAGTGTTTGATGTGAGCTTCAACAAACTGGTTGGAGATTTGCCCGAGTCTTTGGGGAAAATGAAGAAGTTGGAACAGTTGAATGTGGCGCATAACATGTTTTCTGGCGCGATTCCCGAGAGTGTGTGCATGTTACCGAGGTTGGAGAATTTCACATATTCGTATAACTACTTCTGCAGTGAGTCACCAGTCTGTCACAAGTTGAAGGACAAGGATGATACCAAGAATTGCATTCCTTATAGGCCATTGCAAAGGACACCTGATGAGTGTGCAGCTTTTTATAAATATCCCGTTCATTGTAGTGCCTTCGGTTGCACAATGCTGCCGCCTCCACCACCTCCGCCGCCGCCACCTCCGCCTCCACCACCTCCTCCTCCTCCGCCACCGGCAACATACTAA 1197 0.467 MASHSPKRKGPYLNVLSQLSLLVIIISFVNPSHQAEHHSPPLPPLNPRLSKAYVALQAWKHKITSDPKNFTLNWCGPNVCSYTGIYCAPAPDDPHIYTVAGVDLNHATISGSLPEELGLLTDLALFHINSNRFCGSLPNSFNQLNLLHELDISNNKFSGPFPEVLLCISSLKYLDIRFNDFYGNIPSRLFDLKLDALFINNNNFKFSLPENFGNSPVSVVVFANNDLKGCLPPSLTKMKGTLNEIIITNSGLTGCLPSEIGDLDKVTVFDVSFNKLVGDLPESLGKMKKLEQLNVAHNMFSGAIPESVCMLPRLENFTYSYNYFCSESPVCHKLKDKDDTKNCIPYRPLQRTPDECAAFYKYPVHCSAFGCTMLPPPPPPPPPPPPPPPPPPPPPATY 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01085 398 Pfam Leucine rich repeat N-terminal domain 54 87 IPR013210 -
Spst10g01085 398 SUPERFAMILY L domain-like 54 332 - -
Spst10g01085 398 Gene3D Ribonuclease Inhibitor 51 216 IPR032675 -
Spst10g01085 398 MobiDBLite consensus disorder prediction 377 398 - -
Spst10g01085 398 Gene3D Ribonuclease Inhibitor 217 345 IPR032675 -
Spst10g01085 398 FunFam Leucine-rich repeat receptor protein kinase EMS1 212 306 - -
Spst10g01085 398 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 27 394 - -
Spst10g01085 398 FunFam Leucine-rich repeat extensin-like protein 1 53 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01085 Spst-Chr10 11602856 11604052 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01085 18 371 Leucine-rich Repeat extension Gene Families AT3G22800 63.934 7.97e-165 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01085 - - gmx:100813811 656.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01085 10 11602856 11604052 Spst10g01085 10 11602856 11604052 ECH