Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01082 ATGGCTGGTAGGTTGCCCGGGGTTGGGTTGCTTGCAAGGAAGAGAGCAGAGAACCACCATAGACATGAAAATCGACACCACTATTACCTAAAGGAATCACTTGATCCACCTTGGATTCCACTCACTGTCTTAGATGAAACTGCTCTCAAGGCCAGGCAAAGGCTTCACAGGAAGCTTGGACACTTCTTTTCCTCATACGGGTCAAGTGAGAATCCAAGAAAAGACGGAGGAAAAGTAAGGGAATGCAGGAAGCAGAAGAAGGATGGAGGATTGGGACGGAAGTTGTTAGAGGGTTCATGGTTATTGCGTGGGAACAAGATTAAGGAAGAGAGAAAAGTGTGTGCTGTTTGTCTTGAAGATTTGGGAGAAGAGGAACAAGTTATTAACCTTTCATGTTCCCACAAGTATCATTCACCATGTCTTCTTCCCTGGCTTGCAACTCATCCTCATTGTCCTTATTGTCGAACCCCAGTCCATCGCTGA 483 0.4596 MAGRLPGVGLLARKRAENHHRHENRHHYYLKESLDPPWIPLTVLDETALKARQRLHRKLGHFFSSYGSSENPRKDGGKVRECRKQKKDGGLGRKLLEGSWLLRGNKIKEERKVCAVCLEDLGEEEQVINLSCSHKYHSPCLLPWLATHPHCPYCRTPVHR 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01082 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 160 IPR013083 -
Spst10g01082 160 Pfam Ring finger domain 113 155 IPR001841 -
Spst10g01082 160 SMART ring_2 114 154 IPR001841 -
Spst10g01082 160 CDD RING-H2_PA-TM-RING 113 155 - -
Spst10g01082 160 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 57 156 - -
Spst10g01082 160 ProSiteProfiles Zinc finger RING-type profile. 114 155 IPR001841 -
Spst10g01082 160 MobiDBLite consensus disorder prediction 66 86 - -
Spst10g01082 160 SUPERFAMILY RING/U-box 108 158 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01082 108 155 C3H Transcription Factor Family AT3G58720 45.833 2.09e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01082 - - gmx:100527548 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01082 10 11577589 11578503 Spst10g01082 10 11577589 11578503 ECH