Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst10g01082 | ATGGCTGGTAGGTTGCCCGGGGTTGGGTTGCTTGCAAGGAAGAGAGCAGAGAACCACCATAGACATGAAAATCGACACCACTATTACCTAAAGGAATCACTTGATCCACCTTGGATTCCACTCACTGTCTTAGATGAAACTGCTCTCAAGGCCAGGCAAAGGCTTCACAGGAAGCTTGGACACTTCTTTTCCTCATACGGGTCAAGTGAGAATCCAAGAAAAGACGGAGGAAAAGTAAGGGAATGCAGGAAGCAGAAGAAGGATGGAGGATTGGGACGGAAGTTGTTAGAGGGTTCATGGTTATTGCGTGGGAACAAGATTAAGGAAGAGAGAAAAGTGTGTGCTGTTTGTCTTGAAGATTTGGGAGAAGAGGAACAAGTTATTAACCTTTCATGTTCCCACAAGTATCATTCACCATGTCTTCTTCCCTGGCTTGCAACTCATCCTCATTGTCCTTATTGTCGAACCCCAGTCCATCGCTGA | 483 | 0.4596 | MAGRLPGVGLLARKRAENHHRHENRHHYYLKESLDPPWIPLTVLDETALKARQRLHRKLGHFFSSYGSSENPRKDGGKVRECRKQKKDGGLGRKLLEGSWLLRGNKIKEERKVCAVCLEDLGEEEQVINLSCSHKYHSPCLLPWLATHPHCPYCRTPVHR | 160 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst10g01082 | 160 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 99 | 160 | IPR013083 | - | |
Spst10g01082 | 160 | Pfam | Ring finger domain | 113 | 155 | IPR001841 | - | |
Spst10g01082 | 160 | SMART | ring_2 | 114 | 154 | IPR001841 | - | |
Spst10g01082 | 160 | CDD | RING-H2_PA-TM-RING | 113 | 155 | - | - | |
Spst10g01082 | 160 | PANTHER | RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING | 57 | 156 | - | - | |
Spst10g01082 | 160 | ProSiteProfiles | Zinc finger RING-type profile. | 114 | 155 | IPR001841 | - | |
Spst10g01082 | 160 | MobiDBLite | consensus disorder prediction | 66 | 86 | - | - | |
Spst10g01082 | 160 | SUPERFAMILY | RING/U-box | 108 | 158 | - | - |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst10g01082 | 108 | 155 | C3H Transcription Factor Family | AT3G58720 | 45.833 | 2.09e-10 | 55.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst10g01082 | - | - | gmx:100527548 | 259.225 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst10g01082 | 10 | 11577589 | 11578503 | Spst10g01082 | 10 | 11577589 | 11578503 | ECH |